Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 0.0e+00 1325.1 647 100.0
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 0.0e+00 1224.5 649 91.2
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 0.0e+00 1188.3 649 89.1
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 0.0e+00 1168.7 649 88.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 0.0e+00 1119.4 653 84.5
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 0.0e+00 1115.1 653 84.2
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 0.0e+00 1112.8 656 83.8
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 0.0e+00 1112.8 656 83.8
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 0.0e+00 1112.1 656 83.8
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 0.0e+00 1111.3 657 84.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 0.0e+00 1107.8 663 83.1
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 0.0e+00 1106.7 651 83.9
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 9.7e-310 1066.2 653 82.1
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 2.0e-302 1042.0 653 80.1
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 7.3e-289 996.9 657 74.7
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 8.6e-282 973.4 656 76.2
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 8.6e-282 973.4 661 72.6
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.3e-281 971.5 656 76.1
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.3e-281 971.5 656 76.1
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.6e-280 968.0 653 72.6
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.4e-279 966.1 653 72.7
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.1e-279 964.9 653 72.6
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 4.9e-277 957.6 656 72.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.1e-273 946.4 651 71.4
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.6e-272 942.6 655 70.8
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 4.7e-272 941.0 662 71.1
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.4e-271 939.5 663 70.7
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.5e-270 936.0 649 71.0
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 2.0e-270 935.6 660 73.8
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.4e-270 934.9 656 70.7
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.4e-270 934.5 658 70.2
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.2e-269 932.2 655 71.1
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.6e-267 924.5 666 68.9
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 6.0e-267 924.1 657 73.2
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 7.8e-267 923.7 659 70.4
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.0e-266 923.3 660 69.8
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.3e-266 922.2 659 70.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.1e-266 921.0 659 70.3
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 8.6e-266 920.2 650 70.8
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-264 916.4 659 70.0
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.6e-264 914.8 658 69.8
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.4e-263 912.1 669 68.6
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.1e-263 911.8 659 69.7
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 3.1e-263 911.8 651 70.0
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 8.9e-263 910.2 654 68.8
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.8e-262 907.5 659 69.5
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 8.4e-261 903.7 664 68.7
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 7.1e-260 900.6 657 69.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 4.6e-259 897.9 663 68.2
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.0e-258 896.7 657 69.3
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.8e-255 885.9 652 69.5
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 9.0e-255 883.6 664 68.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 9.0e-255 883.6 656 67.4
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.2e-254 883.2 656 67.4
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.5e-254 882.9 664 67.2
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.5e-254 882.9 666 67.4
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.3e-253 879.8 656 67.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 5.4e-252 874.4 662 66.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.2e-251 873.2 664 67.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.1e-249 866.7 560 74.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.1e-248 862.4 550 75.6
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.1e-248 862.4 667 68.1
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.1e-248 862.4 667 68.1
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.7e-245 852.8 660 66.4
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.2e-245 852.4 608 68.6
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.9e-245 852.0 659 65.4
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.9e-245 852.0 659 65.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.8e-245 851.7 656 66.6
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 6.7e-242 840.9 611 67.8
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 6.2e-240 834.3 559 73.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 6.2e-240 834.3 559 73.0
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.4e-239 833.2 560 72.9
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.4e-239 833.2 552 72.3
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 2.4e-239 832.4 530 75.5
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 4.0e-239 831.6 553 71.1
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.0e-238 829.3 678 63.0
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.4e-238 828.6 539 74.4
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.3e-237 826.6 675 62.8
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 3.8e-237 825.1 699 60.8
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 4.9e-237 824.7 640 66.9
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 2.1e-235 819.3 554 70.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.0e-234 815.5 688 61.6
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.0e-234 815.5 562 71.2
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 5.1e-234 814.7 609 67.5
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.5e-233 812.4 552 70.7
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 8.2e-232 807.4 562 70.5
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 2.4e-231 805.8 573 69.8
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.0e-230 802.7 638 63.0
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.1e-228 797.0 630 63.5
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 7.1e-228 794.3 614 65.1
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 9.3e-228 793.9 668 62.6
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 3.9e-226 788.5 550 69.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.7e-226 787.7 670 60.7
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.3e-224 783.5 560 69.3
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 4.8e-224 781.6 550 69.3
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 6.3e-224 781.2 550 69.5
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.4e-223 779.2 667 62.1
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 6.9e-223 777.7 553 68.9
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.9e-222 774.6 552 68.3
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 7.7e-222 774.2 650 59.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 7.9e-219 764.2 670 60.3
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 3.0e-218 762.3 567 66.0
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 5.1e-218 761.5 666 59.3
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 6.7e-218 761.1 561 66.1
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.6e-214 749.2 615 63.4
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.4e-214 748.8 616 60.2
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.9e-212 743.0 667 58.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.2e-211 740.3 504 71.4
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.0e-209 733.0 533 68.5
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 7.4e-209 731.1 658 63.1
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.8e-205 718.8 665 57.4
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.3e-202 709.5 663 57.5
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.6e-201 706.1 658 58.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 2.8e-200 702.6 607 60.6
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-198 697.2 532 67.1
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 2.5e-196 689.5 658 57.0
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.7e-195 686.0 602 59.6
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 7.2e-188 661.4 640 56.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.6e-185 652.9 640 56.1
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.2e-174 617.5 676 51.8
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.6e-174 617.1 651 52.5
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.0e-173 614.4 658 53.6
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.0e-166 590.1 493 61.5
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 5.6e-164 582.0 506 60.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 4.6e-158 562.4 430 64.9
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 3.3e-156 556.2 543 56.4
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 6.4e-152 542.0 563 51.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 1.7e-144 517.3 435 62.1
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 5.8e-137 492.3 339 69.9
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.6e-123 447.6 350 68.6
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.8e-123 446.8 406 55.4
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 8.1e-123 445.3 381 57.7
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.8e-109 401.0 289 65.4
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 7.7e-97 359.0 400 52.5
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.2e-91 340.9 648 36.6
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 5.2e-77 293.1 164 87.8
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.6e-76 290.8 630 32.5
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.8e-53 214.9 218 51.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.9e-48 197.2 198 58.1
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 4.1e-42 177.2 152 57.2
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 3.9e-40 170.6 99 83.8
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 3.3e-31 141.0 295 30.5
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 4.0e-29 134.0 76 84.2
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-23 115.9 101 58.4
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.2e-17 95.9 117 44.4
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.5e-12 79.0 38 92.1
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.3e-11 75.9 148 39.2
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.1e-07 62.8 57 59.6


User provided reference genes

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