Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 2.7e-310 1067.8 524 100.0
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 5.7e-276 953.7 524 88.5
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 3.1e-274 948.0 524 88.5
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 1.5e-271 939.1 518 89.2
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 2.2e-267 925.2 526 87.5
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 8.3e-267 923.3 524 87.8
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 5.4e-266 920.6 526 87.5
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 5.4e-266 920.6 526 87.1
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 2.0e-265 918.7 526 87.3
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 2.7e-265 918.3 526 87.5
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 3.5e-265 917.9 526 87.3
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 6.6e-256 887.1 469 91.0
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 3.1e-245 851.7 524 79.4
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 2.1e-225 785.8 486 80.5
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 2.1e-225 785.8 495 75.8
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 3.5e-225 785.0 514 74.1
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 2.6e-220 768.8 524 71.6
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 7.6e-220 767.3 472 77.5
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 2.2e-219 765.8 525 71.2
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 3.8e-219 765.0 528 70.8
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 3.2e-218 761.9 503 72.4
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 2.7e-217 758.8 498 72.5
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 6.0e-217 757.7 483 73.9
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 1.0e-216 756.9 525 69.7
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.0e-216 756.9 526 70.7
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 1.3e-216 756.5 472 75.6
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 1.3e-216 756.5 524 70.4
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 3.9e-216 755.0 459 78.0
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 8.7e-216 753.8 518 70.1
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.5e-215 753.1 528 69.5
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.9e-215 752.7 478 74.3
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 4.3e-215 751.5 488 74.4
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 4.3e-215 751.5 458 77.1
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 9.6e-215 750.4 476 75.0
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 2.1e-214 749.2 526 70.2
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 3.6e-214 748.4 458 76.6
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 3.6e-214 748.4 452 77.7
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 6.2e-214 747.7 529 69.4
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.4e-213 745.7 529 68.1
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 4.0e-213 745.0 452 77.2
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 9.0e-213 743.8 517 70.4
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 9.0e-213 743.8 477 74.0
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 9.0e-213 743.8 496 71.2
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.5e-212 743.0 483 73.3
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.5e-212 743.0 526 70.0
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 2.2e-211 739.2 478 74.5
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.2e-211 739.2 512 69.3
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 2.2e-211 739.2 543 66.7
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 2.2e-211 739.2 531 68.4
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 2.9e-211 738.8 478 75.1
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 3.8e-211 738.4 476 73.3
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 6.4e-211 737.6 458 75.1
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 1.4e-210 736.5 460 75.2
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 2.4e-210 735.7 457 75.7
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 2.4e-210 735.7 458 75.1
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.2e-210 734.9 507 69.6
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 7.1e-210 734.2 456 74.6
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.6e-209 733.0 526 68.4
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 2.7e-209 732.3 478 73.4
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 7.9e-209 730.7 458 74.9
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 3.0e-208 728.8 502 70.3
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 3.9e-208 728.4 525 68.2
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 5.1e-208 728.0 492 71.3
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 6.7e-208 727.6 482 73.2
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.1e-207 726.9 522 68.0
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.9e-207 726.1 475 72.8
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 2.5e-207 725.7 505 69.7
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 1.6e-206 723.0 466 72.1
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 6.2e-206 721.1 489 71.0
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 8.1e-206 720.7 478 72.2
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 1.1e-205 720.3 466 73.0
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 5.3e-205 718.0 454 74.9
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 5.3e-205 718.0 535 66.4
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 9.0e-205 717.2 453 74.4
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 1.2e-204 716.8 479 70.1
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 1.5e-204 716.5 456 74.1
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 9.9e-204 713.8 498 68.9
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.9e-203 711.4 464 72.0
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 3.2e-202 708.8 457 74.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 5.5e-202 708.0 497 69.6
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 9.3e-202 707.2 458 72.1
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 5.1e-200 701.4 552 64.1
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 1.6e-198 696.4 452 71.7
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 6.9e-197 691.0 453 71.5
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 3.4e-196 688.7 462 71.0
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 5.8e-196 688.0 452 70.4
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 5.8e-196 688.0 454 69.8
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.0e-195 687.2 512 64.6
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 4.9e-195 684.9 456 71.7
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 1.9e-194 682.9 454 69.4
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 4.2e-186 655.2 464 67.5
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 5.5e-186 654.8 485 65.2
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 2.1e-177 626.3 493 63.5
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 5.7e-175 618.2 462 63.4
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 2.8e-174 615.9 449 63.3
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 5.9e-172 608.2 457 65.9
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 3.2e-170 602.4 474 61.2
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 2.1e-169 599.7 490 60.0
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 5.2e-168 595.1 453 62.0
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 4.8e-166 588.6 366 76.2
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 3.8e-163 578.9 431 65.7
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 2.1e-161 573.2 477 60.4
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 1.6e-156 557.0 384 69.8
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 7.5e-135 485.0 315 72.4
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 1.2e-132 477.6 464 51.7
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 3.6e-129 466.1 480 53.5
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 2.4e-117 426.8 312 66.7
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 2.2e-110 403.7 465 47.3
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 4.6e-108 396.0 302 63.9
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 9.0e-104 381.7 463 45.8
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.9e-78 297.0 451 38.4
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 8.5e-38 162.5 100 73.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 2.6e-34 151.0 226 38.5
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 1.4e-32 145.2 110 62.7
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 1.4e-32 145.2 110 62.7
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 1.4e-32 145.2 110 62.7
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 7.0e-32 142.9 96 70.8
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 3.8e-30 137.1 78 79.5
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 1.4e-24 118.6 280 32.5
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 5.6e-21 106.7 57 86.0
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 6.6e-14 83.2 43 93.0
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 3.7e-09 67.4 104 41.3
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 9.2e-08 62.8 41 75.6
BcaC08g45232 Brassica carinata HOM05D000289 ORTHO05D000208 1.2e-07 62.4 45 66.7
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 1.6e-07 62.0 40 67.5


User provided reference genes

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