Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 5.0e-177 624.4 329 100.0
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 8.6e-145 517.3 360 80.0
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 3.0e-142 508.8 360 76.4
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.7e-137 493.0 361 77.8
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.0e-137 492.3 360 73.9
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 1.9e-136 489.6 360 70.8
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 1.2e-135 486.9 364 76.4
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 4.0e-134 481.9 360 73.6
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 5.0e-129 464.9 364 68.7
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 3.6e-127 458.8 362 67.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.1e-123 447.2 323 76.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 9.5e-120 434.1 323 70.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.2e-119 433.7 338 73.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.8e-119 432.6 360 69.7
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 7.6e-117 424.5 347 62.2
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 9.2e-115 417.5 361 63.4
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 3.6e-111 405.6 349 59.6
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 3.6e-103 379.0 298 70.8
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 4.3e-96 355.5 300 57.7
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 3.4e-93 345.9 293 57.7
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.4e-91 339.7 301 53.2
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 3.2e-91 339.3 231 75.3
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 3.2e-91 339.3 301 53.2
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 1.2e-90 337.4 300 55.0
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 1.2e-90 337.4 300 55.0
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.1e-90 336.7 301 52.8
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 4.6e-90 335.5 301 55.5
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 3.9e-89 332.4 290 55.5
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 1.9e-88 330.1 301 54.5
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 3.3e-88 329.3 302 55.3
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 8.2e-87 324.7 290 56.6
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.1e-86 324.3 291 56.0
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 1.8e-86 323.6 301 51.5
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 2.4e-86 323.2 304 52.6
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.4e-86 323.2 285 56.1
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.0e-86 322.4 285 55.8
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 5.3e-86 322.0 304 52.0
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 9.0e-86 321.2 290 54.8
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 1.5e-85 320.5 294 54.1
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 4.5e-85 318.9 294 54.8
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 7.6e-85 318.2 282 55.3
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 1.0e-84 317.8 295 53.6
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.7e-84 317.0 290 54.1
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 2.9e-84 316.2 301 52.2
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 8.4e-84 314.7 287 55.1
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.1e-83 314.3 273 55.3
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 1.9e-83 313.5 302 53.0
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.5e-83 313.2 302 52.3
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 7.1e-83 311.6 303 52.1
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 9.3e-83 311.2 190 82.6
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 9.3e-83 311.2 302 52.3
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.6e-82 310.5 301 50.8
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 2.7e-82 309.7 301 51.5
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 4.6e-82 308.9 293 52.9
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.0e-82 308.5 302 51.3
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.0e-81 307.8 292 53.1
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.0e-81 307.8 294 52.4
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.3e-81 306.6 302 51.0
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 3.9e-81 305.8 295 51.5
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 5.1e-81 305.4 273 53.8
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 5.1e-81 305.4 270 55.2
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.1e-80 304.3 280 53.2
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 1.5e-80 303.9 302 51.3
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.5e-80 303.9 294 51.7
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.5e-80 303.9 294 51.4
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.9e-80 303.5 301 50.5
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.9e-80 303.5 301 50.2
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 7.4e-80 301.6 300 51.3
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 9.7e-80 301.2 292 49.7
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.1e-78 297.7 292 50.0
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.4e-78 297.4 273 52.7
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 2.4e-78 296.6 275 53.8
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 1.2e-77 294.3 331 51.7
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 2.6e-77 293.1 302 48.0
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 5.9e-77 292.0 299 48.5
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 5.9e-77 292.0 278 50.7
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.6e-77 291.6 291 49.5
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.3e-76 290.8 292 49.0
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 2.5e-75 286.6 279 53.4
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 1.0e-73 281.2 277 50.2
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 2.3e-73 280.0 275 52.0
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 3.0e-73 279.6 291 47.1
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 3.0e-73 279.6 270 51.5
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.1e-72 277.7 267 51.3
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 3.7e-71 272.7 190 67.9
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 3.7e-71 272.7 280 48.6
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 4.8e-71 272.3 312 46.8
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 8.2e-71 271.6 190 65.8
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 4.1e-70 269.2 280 47.9
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 1.7e-68 263.8 263 49.4
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 3.8e-68 262.7 297 45.8
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 6.5e-68 261.9 242 53.3
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 6.5e-68 261.9 284 46.5
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 1.4e-67 260.8 271 48.0
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 6.1e-66 255.4 189 63.0
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 3.0e-65 253.1 298 45.0
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 2.6e-64 250.0 244 50.4
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 9.7e-64 248.1 190 62.1
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 1.8e-62 243.8 269 48.0
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 9.1e-62 241.5 179 63.7
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.2e-58 231.1 164 75.0
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 8.8e-57 224.9 265 43.4
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 6.3e-55 218.8 164 57.3
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 3.1e-54 216.5 311 39.9
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 9.4e-51 204.9 275 40.4
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 5.7e-48 195.7 273 40.3
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 3.7e-47 193.0 307 36.2
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 8.2e-47 191.8 193 50.8
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 2.2e-44 183.7 129 66.7
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 5.5e-43 179.1 303 34.3
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 7.2e-43 178.7 179 53.1
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.7e-42 176.0 281 35.9
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 6.1e-42 175.6 278 36.3
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 8.0e-42 175.3 263 40.3
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 3.4e-40 169.9 117 65.8
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 4.4e-40 169.5 172 47.1
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.8e-39 166.8 167 52.7
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 9.1e-38 161.8 128 55.5
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.6e-34 151.0 119 59.7
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 2.3e-33 147.1 127 61.4
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.3e-33 147.1 119 58.8
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 2.6e-32 143.7 317 29.7
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 3.4e-32 143.3 123 56.9
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 5.7e-32 142.5 309 30.1
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.1e-30 138.3 299 30.8
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 1.1e-30 138.3 119 54.6
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.4e-30 136.0 173 41.6
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 2.3e-28 130.6 292 31.8
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 3.8e-28 129.8 78 76.9
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 5.0e-28 129.4 106 57.5
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 4.6e-21 106.3 254 27.2
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.0e-20 105.1 223 31.8
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.5e-19 100.5 85 58.8
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 1.2e-16 91.7 65 64.6
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 2.0e-16 90.9 64 65.6
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 9.8e-16 88.6 73 57.5
BcaC08g45153 Brassica carinata HOM05D000590 ORTHO05D032951 4.1e-14 83.2 89 74.2
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 4.1e-14 83.2 59 61.0
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.1e-14 83.2 64 57.8
C06p27710 Brassica napus HOM05D000590 ORTHO05D032951 9.2e-14 82.0 89 76.4
C06p27870 Brassica napus HOM05D000590 ORTHO05D032951 9.2e-14 82.0 89 76.4
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 1.2e-13 81.6 61 55.7
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 1.7e-12 77.8 154 29.2
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.6e-11 72.8 51 58.8
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 2.8e-10 70.5 43 69.8
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 1.3e-07 61.6 169 27.2


User provided reference genes

Program Settings