Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 0.0e+00 2188.7 1144 100.0
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 0.0e+00 1775.0 1145 81.2
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 0.0e+00 1735.3 1146 80.1
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 0.0e+00 1704.1 1145 79.3
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 0.0e+00 1656.3 1144 78.0
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 0.0e+00 1655.2 1151 78.5
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 0.0e+00 1652.5 1151 78.5
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 0.0e+00 1632.5 1151 77.8
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 0.0e+00 1632.5 1151 77.8
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 0.0e+00 1614.4 1151 77.9
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 0.0e+00 1419.1 1129 71.6
BcaC08g45164 Brassica carinata HOM05D005676 ORTHO05D007375 0.0e+00 1334.7 1030 71.8
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 0.0e+00 1316.6 1159 62.6
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 0.0e+00 1266.9 1145 62.6
AT5G28400 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 3.7e-296 1021.9 888 66.3
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 1.4e-266 923.7 1194 47.6
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 9.9e-265 917.5 1183 47.5
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 4.9e-264 915.2 1174 46.8
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 6.4e-256 888.3 1273 43.9
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 1.9e-255 886.7 1213 45.5
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 4.6e-254 882.1 1192 45.6
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 5.8e-249 865.1 1192 45.2
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 1.1e-247 860.9 1199 45.7
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 2.7e-246 856.3 1142 45.7
AT5G28320 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 3.0e-245 852.8 878 59.7
Potri.014G099100 Populus trichocarpa HOM05D005676 ORTHO05D007375 1.9e-244 850.1 1191 44.4
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 2.5e-244 849.7 1181 46.1
Sabra14G0072700 Salix brachista HOM05D005676 ORTHO05D007375 3.7e-243 845.9 1182 44.2
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 3.1e-242 842.8 1126 45.5
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 2.0e-241 840.1 1172 44.8
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.4e-240 834.7 1193 45.2
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 1.4e-239 833.9 1124 45.7
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 5.5e-239 832.0 1235 42.7
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 9.3e-239 831.2 1237 42.9
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.6e-238 828.9 1192 44.5
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 4.6e-238 828.9 1226 42.4
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 1.0e-237 827.8 1106 45.8
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.3e-237 827.4 1192 44.9
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 8.7e-237 824.7 1234 42.4
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 8.7e-237 824.7 1174 44.3
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.5e-236 823.9 1197 44.4
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 7.4e-236 821.6 1187 43.1
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.3e-235 820.8 1192 44.1
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 1.6e-235 820.5 1194 44.7
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 6.3e-235 818.5 1206 42.9
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 9.0e-234 814.7 1144 44.5
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 1.2e-233 814.3 1148 44.3
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 2.2e-232 810.1 1098 46.4
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 5.0e-232 808.9 1210 43.4
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 1.1e-231 807.7 1236 41.8
Cpa.g.sc96.24 Carica papaya HOM05D005676 ORTHO05D007375 2.5e-231 806.6 1106 44.9
COL.COLO4_06282 Corchorus olitorius HOM05D005676 ORTHO05D007375 5.5e-231 805.4 1177 45.0
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 2.7e-230 803.1 1317 40.4
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 5.7e-228 795.4 1347 39.1
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 2.0e-225 786.9 1220 42.5
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 1.1e-223 781.2 1188 41.4
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 3.2e-223 779.6 1158 43.0
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 1.2e-222 777.7 1196 41.1
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 4.6e-222 775.8 1194 42.0
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 4.6e-222 775.8 1194 40.8
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 7.9e-222 775.0 1191 40.8
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 5.1e-221 772.3 1390 38.6
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 8.8e-221 771.5 1126 43.9
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 5.3e-218 762.3 1168 40.4
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 6.9e-218 761.9 1358 38.5
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 1.5e-217 760.8 1246 40.3
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 1.5e-217 760.8 1247 41.2
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 2.0e-217 760.4 1189 42.6
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 2.0e-217 760.4 1173 41.9
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 4.5e-217 759.2 1346 38.6
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 4.5e-217 759.2 1061 45.4
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 5.9e-217 758.8 1358 39.2
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 7.7e-217 758.4 1179 41.3
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 1.1e-212 744.6 1104 41.8
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 2.0e-212 743.8 1180 41.6
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 5.7e-212 742.3 1351 37.9
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 1.3e-211 741.1 996 45.4
Ciclev10023383m.g Citrus clementina HOM05D005676 ORTHO05D007375 4.5e-209 732.6 1170 41.5
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 5.9e-209 732.3 976 46.8
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 6.5e-208 728.8 1353 37.6
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 1.5e-207 727.6 1367 38.6
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 2.7e-206 723.4 1371 37.8
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 6.1e-206 722.2 1134 41.4
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 1.6e-198 697.6 1192 39.9
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 2.7e-198 696.8 978 44.4
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 4.0e-197 693.0 1146 39.9
SGA_v2.0_scaffold5G03020 Striga asiatica HOM05D005676 ORTHO05D007375 6.8e-197 692.2 1209 39.9
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 2.8e-190 670.2 992 42.7
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 2.0e-185 654.1 644 53.7
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 1.3e-184 651.4 942 43.7
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 1.7e-184 651.0 1122 39.6
AL5G43810 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 6.4e-179 632.5 670 56.4
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 4.3e-175 619.8 930 42.8
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 4.7e-174 616.3 901 42.0
ATR0602G016 Amborella trichopoda HOM05D005676 ORTHO05D007375 9.3e-130 469.2 1068 34.0
Gohir.D11G101600 Gossypium hirsutum HOM05D005676 ORTHO05D007375 1.6e-121 441.8 827 38.9
Glyma.07G055432 Glycine max HOM05D005676 ORTHO05D007375 1.2e-100 372.5 276 63.0
Gohir.D11G101550 Gossypium hirsutum HOM05D005676 ORTHO05D007375 4.0e-80 304.3 215 67.0
Actinidia20244 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.6e-76 292.4 733 32.9
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 5.9e-76 290.4 1059 28.6
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 1.4e-69 269.2 1128 26.5
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 7.0e-69 266.9 455 37.4
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 3.3e-66 258.1 181 66.9
MD07G1150200 Malus domestica HOM05D005676 ORTHO05D007375 5.0e-59 234.2 461 36.0
Oeu007893.1 Olea europaea HOM05D005676 ORTHO05D007375 1.2e-57 229.6 593 31.2
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.5e-42 178.7 430 30.2
MBI06_g46582_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 1.7e-27 129.4 237 35.9
FAN06G2271 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.0e-27 128.6 512 28.7
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.9e-26 125.9 140 45.0
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 2.5e-26 125.6 568 21.5
TPR.G23509 Trifolium pratense HOM05D005676 ORTHO05D007375 2.9e-22 112.1 125 44.8
FvH4_7g16530 Fragaria vesca HOM05D005676 ORTHO05D007375 2.4e-21 109.0 62 80.6
Cpa.g.sc96.22 Carica papaya HOM05D005676 ORTHO05D007375 7.1e-21 107.5 91 64.8
Glyma.07G055366 Glycine max HOM05D005676 ORTHO05D007375 6.7e-19 100.9 181 35.4
Aa31LG8G12350 Aethionema arabicum HOM05D005676 ORTHO05D007375 1.3e-17 96.7 114 52.6
ATR0602G131 Amborella trichopoda HOM05D005676 ORTHO05D007375 2.8e-17 95.5 66 71.2
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 4.0e-16 91.7 399 24.3
MD07G1150300 Malus domestica HOM05D005676 ORTHO05D007375 1.9e-13 82.8 149 38.3
FAN03G3457 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.2e-13 81.6 227 33.0
FAN06G3424 Fragaria x ananassa HOM05D005676 ORTHO05D007375 7.1e-13 80.9 256 30.1
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 2.3e-11 75.9 177 28.2
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 5.1e-11 74.7 166 31.3
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 2.5e-10 72.4 114 31.6
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 3.3e-10 72.0 176 29.0
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 4.3e-10 71.6 171 28.1
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 1.3e-09 70.1 168 25.0
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.6e-09 69.7 125 35.2
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 2.8e-09 68.9 118 33.1
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 2.8e-09 68.9 114 30.7
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 2.8e-09 68.9 114 30.7
FvH4_7g16531 Fragaria vesca HOM05D005676 ORTHO05D007375 3.7e-09 68.6 107 43.9
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 4.8e-09 68.2 218 26.1
FAN06G0289 Fragaria x ananassa HOM05D005676 ORTHO05D007375 6.2e-09 67.8 36 83.3
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 8.2e-09 67.4 204 26.0
A06p02540 Brassica napus HOM05D005676 ORTHO05D040540 8.2e-09 67.4 77 55.8
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 8.2e-09 67.4 122 32.0
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 1.4e-08 66.6 190 30.0
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 1.4e-08 66.6 123 28.5
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.4e-08 66.6 133 30.1
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 1.4e-08 66.6 183 29.5
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.8e-08 66.2 171 26.9
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 2.4e-08 65.9 120 29.2
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 2.4e-08 65.9 120 29.2
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 2.4e-08 65.9 120 29.2
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 3.1e-08 65.5 120 29.2
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 4.0e-08 65.1 146 28.8
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.0e-08 65.1 146 28.8
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.0e-08 65.1 146 28.8
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 6.9e-08 64.3 196 28.1
FAN03G0940 Fragaria x ananassa HOM05D005676 ORTHO05D007375 6.9e-08 64.3 94 46.8
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 9.0e-08 63.9 120 28.3
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 1.2e-07 63.5 172 26.7
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 1.5e-07 63.2 190 28.4
FvH4_7g16560 Fragaria vesca HOM05D005676 ORTHO05D007375 1.5e-07 63.2 240 31.2
FAN06G1105 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.5e-07 63.2 240 31.2
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 2.0e-07 62.8 120 25.8
FAN03G0974 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.4e-07 62.0 257 30.0
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 4.5e-07 61.6 134 26.9
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 4.5e-07 61.6 77 35.1
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 2.2e-06 59.3 135 25.2
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 2.2e-06 59.3 122 28.7
SEGI_23790 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.9e-06 58.9 75 38.7


User provided reference genes

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