Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.2e-219 766.1 362 100.0
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 4.0e-204 714.5 362 92.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 9.0e-204 713.4 362 91.4
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.5e-203 712.6 363 92.8
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.6e-203 711.8 362 91.7
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 5.8e-203 710.7 362 92.0
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 7.6e-203 710.3 362 91.4
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 7.6e-203 710.3 362 91.4
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.3e-202 709.5 362 91.4
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.3e-202 709.5 362 91.4
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 3.2e-201 704.9 362 90.6
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 4.2e-201 704.5 362 90.3
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 2.0e-187 659.1 359 82.5
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 4.8e-157 558.1 361 69.5
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.8e-157 558.1 362 70.4
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.3e-157 557.8 362 70.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.8e-156 556.2 362 70.4
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 2.0e-155 552.7 363 70.2
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 7.7e-155 550.8 361 70.9
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.3e-154 550.1 362 69.6
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.7e-154 549.7 360 70.0
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.9e-154 548.9 341 71.6
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 2.9e-154 548.9 361 71.5
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.0e-154 548.1 356 70.8
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.5e-153 546.6 359 70.2
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.5e-153 545.8 346 71.7
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 3.2e-153 545.4 360 70.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 4.2e-153 545.0 330 73.9
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.2e-153 544.3 361 70.1
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.2e-153 544.3 361 70.1
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 7.2e-153 544.3 360 69.7
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.2e-152 543.5 359 69.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.6e-152 543.1 364 68.1
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 4.7e-152 541.6 361 70.1
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 6.1e-152 541.2 360 68.1
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.8e-151 539.7 344 71.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 2.3e-151 539.3 364 67.3
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.3e-151 539.3 364 67.9
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.0e-151 538.9 338 72.2
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.7e-151 537.7 338 71.9
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 8.8e-151 537.3 345 71.3
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.5e-150 536.6 363 68.0
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.6e-150 535.8 364 67.0
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 4.4e-150 535.0 346 70.5
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 4.4e-150 535.0 345 70.1
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 5.7e-150 534.6 364 66.5
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 7.5e-150 534.3 342 67.5
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 4.8e-149 531.6 363 67.2
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.1e-148 530.4 363 65.8
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.1e-148 530.4 355 68.2
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 2.4e-148 529.3 360 66.4
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 4.1e-148 528.5 364 65.9
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.6e-147 526.6 362 65.7
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 5.9e-147 524.6 335 71.0
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 3.8e-146 521.9 362 65.7
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.0e-146 521.5 361 64.5
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 6.5e-146 521.2 361 64.8
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.2e-145 518.8 347 68.6
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 4.2e-145 518.5 311 75.6
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.2e-145 518.5 358 64.0
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 9.4e-145 517.3 377 66.0
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.2e-144 516.9 356 64.6
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 2.1e-144 516.2 344 66.6
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 2.1e-144 516.2 353 68.8
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 3.0e-143 512.3 363 65.6
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 6.8e-143 511.1 355 64.5
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.0e-142 509.6 320 72.2
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.4e-142 508.8 360 64.2
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 4.4e-142 508.4 319 72.1
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.4e-142 508.4 360 63.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 7.5e-142 507.7 361 64.0
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 7.5e-142 507.7 319 72.1
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 7.5e-142 507.7 312 70.5
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 9.8e-142 507.3 319 72.1
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.7e-141 506.5 350 66.0
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.7e-141 505.4 364 64.0
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 8.3e-141 504.2 360 63.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.4e-140 503.4 343 66.5
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.8e-140 503.1 267 83.9
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 9.1e-140 500.7 354 62.7
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 2.7e-139 499.2 363 63.6
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.5e-137 493.4 360 63.9
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 4.7e-136 488.4 442 52.7
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.8e-135 486.5 355 62.5
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.8e-135 486.5 350 62.9
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.6e-134 482.6 362 62.2
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 7.5e-134 481.1 357 62.5
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.3e-133 480.3 343 64.7
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.7e-133 479.9 361 62.3
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 2.2e-133 479.6 436 53.0
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.8e-133 479.2 355 61.1
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.4e-132 476.9 351 62.4
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.8e-132 476.5 358 63.7
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.8e-132 476.5 351 62.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.4e-132 476.1 358 63.7
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.1e-132 475.3 351 61.8
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 7.8e-131 471.1 361 59.8
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 1.0e-130 470.7 340 62.4
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.0e-130 470.7 359 60.2
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.9e-130 469.2 341 62.8
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 2.9e-130 469.2 335 65.7
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 3.8e-130 468.8 348 64.4
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 6.6e-130 468.0 355 63.7
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.6e-128 463.4 394 56.9
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.5e-126 456.8 360 57.8
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.5e-126 456.8 360 58.6
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 7.5e-126 454.5 332 61.7
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.1e-124 448.7 362 56.9
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.9e-121 439.9 276 72.1
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 4.3e-121 438.7 276 71.7
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 3.6e-120 435.6 276 71.4
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 6.4e-117 424.9 340 58.8
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.4e-116 423.7 270 71.1
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.0e-115 419.9 313 61.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.1e-108 395.6 261 66.7
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.2e-104 384.0 337 54.0
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.2e-102 377.5 229 74.2
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 4.4e-102 375.6 289 58.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.2e-100 369.4 251 68.5
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 2.3e-98 363.2 320 55.9
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 3.4e-94 349.4 346 49.1
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-93 347.4 206 75.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 6.2e-88 328.6 216 68.1
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 9.0e-87 324.7 229 62.4
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.6e-86 323.2 229 61.6
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.6e-86 323.2 261 58.6
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.7e-83 313.2 330 47.6
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.5e-81 307.4 360 43.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.8e-80 303.1 300 50.3
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.4e-79 300.8 168 81.0
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.4e-79 300.1 205 68.8
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.4e-78 296.2 346 43.9
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.2e-77 293.5 205 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 6.4e-77 292.0 320 46.9
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 3.3e-73 279.6 192 66.7
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 8.5e-61 238.4 240 48.8
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.3e-56 222.2 153 66.7
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 3.8e-53 213.0 158 60.8
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 4.5e-38 162.9 143 53.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 2.7e-35 153.7 217 37.3
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 8.2e-32 142.1 108 60.2
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.7e-30 137.1 111 62.2
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.5e-22 110.2 98 54.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.3e-21 107.5 102 47.1
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 2.3e-18 97.4 99 46.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 8.6e-13 79.0 126 32.5
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 2.9e-08 63.9 114 34.2


User provided reference genes

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