Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.4e-127 459.5 366 100.0
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 5.5e-92 342.0 390 78.5
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 1.0e-90 337.8 398 75.6
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.0e-90 337.8 398 72.9
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 3.0e-90 336.3 390 77.4
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 3.3e-89 332.8 370 75.7
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 4.4e-89 332.4 377 70.6
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.7e-89 332.0 382 79.1
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 9.7e-89 331.3 371 76.3
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 1.8e-87 327.0 377 75.3
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.7e-85 320.5 249 81.9
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.2e-83 314.3 377 76.1
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 1.8e-82 310.5 391 74.7
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 1.3e-77 294.3 374 75.1
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 9.1e-71 271.6 398 65.1
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 2.7e-70 270.0 232 80.6
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 5.5e-68 262.3 390 72.8
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.5e-41 174.5 292 43.8
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 4.7e-35 152.9 374 51.9
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 4.9e-24 116.3 251 39.0
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 6.4e-24 115.9 225 42.7
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 9.2e-23 112.1 212 43.9
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 3.3e-20 103.6 198 38.4
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.3e-20 103.2 239 36.0
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.3e-20 103.2 239 36.0
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 5.6e-20 102.8 250 36.0
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 7.3e-20 102.4 237 34.2
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 1.2e-19 101.7 217 45.6
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.6e-19 101.3 260 33.8
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.6e-19 101.3 239 35.1
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.1e-19 100.9 223 35.4
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.1e-19 100.9 223 35.4
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.1e-19 100.9 275 33.1
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.8e-19 100.5 165 40.0
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 3.6e-19 100.1 256 34.0
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 6.2e-19 99.4 197 36.5
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 8.1e-19 99.0 223 35.4
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 8.1e-19 99.0 223 35.4
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.1e-18 98.6 209 34.9
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-18 98.6 277 33.2
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-18 98.6 276 34.1
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.4e-18 98.2 260 33.8
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 1.8e-18 97.8 265 33.6
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-18 97.8 265 33.6
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-18 97.8 257 34.2
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.2e-18 96.3 147 40.8
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.9e-18 95.9 265 33.6
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 2.0e-17 94.4 258 33.3
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.4e-17 93.6 216 34.3
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.4e-17 93.2 276 33.7
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 4.4e-17 93.2 148 42.6
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 5.8e-17 92.8 137 57.7
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 5.8e-17 92.8 200 33.0
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 5.8e-17 92.8 236 32.2
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 7.6e-17 92.4 253 33.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 7.6e-17 92.4 237 34.2
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.3e-16 91.7 235 30.6
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 2.9e-16 90.5 256 31.2
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.9e-16 90.5 221 36.7
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 2.9e-16 90.5 263 30.0
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 3.8e-16 90.1 228 32.0
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 3.8e-16 90.1 256 28.1
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 4.9e-16 89.7 211 37.4
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 4.9e-16 89.7 213 36.6
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.1e-15 88.6 225 31.6
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.4e-15 87.4 262 32.1
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 3.2e-15 87.0 148 39.2
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 4.2e-15 86.7 217 32.7
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 5.4e-15 86.3 248 32.3
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 7.1e-15 85.9 255 30.2
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 7.1e-15 85.9 222 32.0
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 9.3e-15 85.5 225 35.6
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 1.2e-14 85.1 262 32.1
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.2e-14 85.1 229 32.8
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 2.1e-14 84.3 246 32.1
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.1e-14 84.3 132 39.4
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 2.1e-14 84.3 217 32.3
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 3.5e-14 83.6 240 33.3
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.6e-14 83.2 226 31.9
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 4.6e-14 83.2 250 36.8
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 6.0e-14 82.8 207 32.4
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.7e-13 81.3 187 32.6
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.7e-13 81.3 187 32.6
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.7e-13 81.3 244 32.4
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 2.3e-13 80.9 242 35.5
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.0e-13 80.5 212 33.0
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.0e-13 80.5 259 28.2
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 6.6e-13 79.3 151 39.1
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.1e-12 78.6 202 35.1
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 1.5e-12 78.2 228 32.9
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.5e-12 78.2 247 29.1
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.5e-12 78.2 224 37.5
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.9e-12 77.8 247 31.2
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.5e-12 77.4 246 32.1
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.5e-12 77.4 131 40.5
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 4.3e-12 76.6 198 34.8
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 4.3e-12 76.6 211 32.2
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 5.6e-12 76.3 219 32.4
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.1e-11 74.3 192 30.7
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 2.1e-11 74.3 244 32.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 4.8e-11 73.2 212 34.4
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 4.8e-11 73.2 127 36.2
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 4.8e-11 73.2 215 33.0
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 6.2e-11 72.8 235 29.4
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 6.2e-11 72.8 145 36.6
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 8.1e-11 72.4 137 35.0
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 1.1e-10 72.0 234 34.2
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.1e-10 72.0 123 37.4
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 3.1e-10 70.5 142 35.9
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 5.3e-10 69.7 216 30.6
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 6.9e-10 69.3 232 31.9
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 2.0e-09 67.8 123 53.7
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.0e-09 67.8 114 35.1
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 2.6e-09 67.4 147 36.7
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.4e-09 67.0 114 38.6
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.4e-09 67.0 226 28.8
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 9.9e-09 65.5 240 27.1
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.7e-08 64.7 207 30.0
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.2e-08 64.3 120 35.8
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 2.2e-08 64.3 228 32.5
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.2e-08 64.3 132 32.6
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.9e-08 63.9 201 29.4
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 8.4e-08 62.4 241 27.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 3.2e-07 60.5 214 28.5
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 7.1e-07 59.3 221 31.2
BcaC02g12662 Brassica carinata HOM05D004242 ORTHO05D004349 9.3e-07 58.9 154 64.9
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 9.3e-07 58.9 146 33.6
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 1.2e-06 58.5 153 28.8
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 1.6e-06 58.2 139 29.5
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 1.6e-06 58.2 108 38.0
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.1e-06 57.8 110 34.5
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 2.1e-06 57.8 207 31.9
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 2.7e-06 57.4 139 29.5
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.7e-06 57.4 145 46.2
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.5e-06 57.0 141 33.3
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 7.9e-06 55.8 227 28.6
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 7.9e-06 55.8 119 33.6
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 7.9e-06 55.8 215 24.7
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 7.9e-06 55.8 232 32.3


User provided reference genes

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