Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g28290 Schrenkiella parvula HOM05D006269 ORTHO05D001487 0.0e+00 1291.6 658 100.0
Thhalv10001302m.g Eutrema salsugineum HOM05D006269 ORTHO05D001487 2.6e-241 839.0 668 70.8
BcaC02g12510 Brassica carinata HOM05D006269 ORTHO05D001487 1.0e-221 773.9 671 66.8
BraA05t19151Z Brassica rapa HOM05D006269 ORTHO05D001487 2.3e-221 772.7 663 65.6
C04p01780 Brassica napus HOM05D006269 ORTHO05D001487 3.3e-220 768.8 662 66.6
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 6.8e-218 761.1 661 65.8
BcaC02g12701 Brassica carinata HOM05D006269 ORTHO05D001487 8.3e-216 754.2 663 65.3
AL4G45510 Arabidopsis lyrata HOM05D006269 ORTHO05D001487 2.1e-203 713.0 751 55.9
AT2G46240 Arabidopsis thaliana HOM05D006269 ORTHO05D001487 1.0e-197 694.1 749 55.4
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 1.1e-188 664.1 746 54.0
Aa31LG1G27630 Aethionema arabicum HOM05D006269 ORTHO05D001487 3.6e-142 509.6 674 48.4
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 3.0e-64 250.8 714 32.2
Cfa003851 Carpinus fangiana HOM05D006269 ORTHO05D001487 6.0e-57 226.5 724 30.0
Haze_15599 Corylus avellana HOM05D006269 ORTHO05D001487 3.9e-56 223.8 717 30.4
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 3.9e-56 223.8 688 32.0
Thecc.01G349600 Theobroma cacao HOM05D006269 ORTHO05D001487 3.3e-55 220.7 726 31.1
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 2.6e-52 211.1 703 29.6
Manes.01G250800 Manihot esculenta HOM05D006269 ORTHO05D001487 1.7e-51 208.4 703 30.6
QL04p034904 Quercus lobata HOM05D006269 ORTHO05D001487 1.7e-51 208.4 710 30.0
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 2.5e-50 204.5 702 31.8
VMungo0331G1091 Vigna mungo HOM05D006269 ORTHO05D001487 7.2e-50 203.0 697 30.8
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 6.1e-49 199.9 714 28.7
Sabra02G0145300 Salix brachista HOM05D006269 ORTHO05D001487 7.9e-49 199.5 732 30.1
Gorai.004G153900 Gossypium raimondii HOM05D006269 ORTHO05D001487 3.9e-48 197.2 727 28.5
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 6.7e-48 196.4 773 29.4
Sc01g0003100 Simmondsia chinensis HOM05D006269 ORTHO05D001487 8.2e-46 189.5 657 29.5
Glyma.07G061500 Glycine max HOM05D006269 ORTHO05D001487 1.8e-45 188.3 746 29.0
Glyma.16G030000 Glycine max HOM05D006269 ORTHO05D001487 1.8e-45 188.3 677 29.7
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 1.8e-45 188.3 700 30.3
Gohir.D08G148200 Gossypium hirsutum HOM05D006269 ORTHO05D001487 6.9e-45 186.4 727 28.1
Ah.05g180020 Amaranthus hybridus HOM05D006269 ORTHO05D001487 9.1e-45 186.0 700 29.1
Prupe.2G181700 Prunus persica HOM05D006269 ORTHO05D001487 1.2e-44 185.7 768 29.6
Ca_23548_v3 Cicer arietinum L. HOM05D006269 ORTHO05D001487 1.0e-43 182.6 635 28.3
Gohir.A08G126800 Gossypium hirsutum HOM05D006269 ORTHO05D001487 1.3e-43 182.2 688 28.3
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 1.7e-43 181.8 729 28.9
Phvul.010G107400 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 6.5e-43 179.9 724 28.7
CAN.G78.145 Capsicum annuum HOM05D006269 ORTHO05D001487 8.5e-43 179.5 736 26.9
PGSC0003DMG400000079 Solanum tuberosum HOM05D006269 ORTHO05D001487 1.1e-42 179.1 739 28.3
Aqoxy1G02938 Aquilegia oxysepala HOM05D006269 ORTHO05D001487 1.9e-42 178.3 624 30.9
Medtr8g028265 Medicago truncatula HOM05D006269 ORTHO05D001487 1.2e-41 175.6 656 27.3
Eucgr.D02334 Eucalyptus grandis HOM05D006269 ORTHO05D001487 7.9e-41 172.9 649 29.3
Ciclev10018596m.g Citrus clementina HOM05D006269 ORTHO05D001487 3.9e-40 170.6 707 28.9
Migut.N01576 Erythranthe guttata HOM05D006269 ORTHO05D001487 3.9e-40 170.6 635 29.8
CANSAT56G0891 Cannabis sativa HOM05D006269 ORTHO05D001487 1.5e-39 168.7 691 28.4
Actinidia20177 Actinidia chinensis HOM05D006269 ORTHO05D001487 2.0e-39 168.3 691 28.8
TAR374G0506 Trochodendron aralioides HOM05D006269 ORTHO05D001487 2.6e-39 167.9 729 26.9
Peaxi162Scf01254g00022 Petunia axillaris HOM05D006269 ORTHO05D001487 4.4e-39 167.2 720 26.9
SGA_v2.0_scaffold11G05704 Striga asiatica HOM05D006269 ORTHO05D001487 4.4e-39 167.2 701 30.0
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 5.7e-39 166.8 734 26.8
EL10Ac1g00334 Beta vulgaris HOM05D006269 ORTHO05D001487 9.7e-39 166.0 729 28.7
AUR62004430 Chenopodium quinoa HOM05D006269 ORTHO05D001487 1.3e-38 165.6 737 28.5
PGR031G2857 Punica granatum HOM05D006269 ORTHO05D001487 1.3e-38 165.6 658 29.2
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.2e-38 164.9 793 26.6
Oeu008674.2 Olea europaea HOM05D006269 ORTHO05D001487 8.2e-38 162.9 628 28.5
Lj3g0001651 Lotus japonicus HOM05D006269 ORTHO05D001487 1.4e-37 162.2 672 28.3
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 1.4e-37 162.2 636 28.3
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 2.4e-37 161.4 719 27.3
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.4e-37 161.4 792 25.9
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 3.1e-37 161.0 793 26.6
TPR.G21288 Trifolium pratense HOM05D006269 ORTHO05D001487 4.1e-37 160.6 700 27.1
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 5.3e-37 160.2 735 28.7
MD01G1073600 Malus domestica HOM05D006269 ORTHO05D001487 9.1e-37 159.5 659 28.8
AUR62022637 Chenopodium quinoa HOM05D006269 ORTHO05D001487 2.0e-36 158.3 762 28.2
MELO3C021171.2 Cucumis melo HOM05D006269 ORTHO05D001487 2.0e-36 158.3 732 27.6
Hund27233 Selenicereus undatus HOM05D006269 ORTHO05D001487 2.0e-36 158.3 652 27.9
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.6e-36 157.9 793 26.7
Sed0002830 Sechium edule HOM05D006269 ORTHO05D001487 4.5e-36 157.1 706 28.9
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 8.5e-35 152.9 791 26.3
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 1.9e-34 151.8 741 26.6
ClCG06G003310 Citrullus lanatus HOM05D006269 ORTHO05D001487 1.9e-34 151.8 718 28.0
CsaV3_6G000970 Cucumis sativus L. HOM05D006269 ORTHO05D001487 4.2e-34 150.6 736 26.9
Actinidia10090 Actinidia chinensis HOM05D006269 ORTHO05D001487 1.4e-32 145.6 348 35.9
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 1.4e-32 145.6 767 26.2
Solyc01g095320.4 Solanum lycopersicum HOM05D006269 ORTHO05D001487 1.4e-32 145.6 715 24.8
Sopen01g039110 Solanum pennellii HOM05D006269 ORTHO05D001487 3.0e-32 144.4 665 24.8
Zm00001eb237960 Zea mays HOM05D006269 ORTHO05D001487 5.7e-31 140.2 735 28.0
Lsat_1_v5_gn_3_138421 Lactuca sativa HOM05D006269 ORTHO05D001487 2.8e-30 137.9 651 27.6
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 4.8e-30 137.1 540 28.5
HPP92_008793 Vanilla planifolia HOM05D006269 ORTHO05D001487 1.0e-27 129.4 700 25.6
DCAR_008644 Daucus carota HOM05D001461 ORTHO05D001487 4.7e-25 120.6 701 24.5
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 1.1e-21 109.4 258 34.5
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 4.5e-20 104.0 206 35.9
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.9e-18 98.6 298 30.5
HanXRQChr06g0166911 Helianthus annuus HOM05D006269 ORTHO05D001487 3.2e-18 97.8 355 28.5
Zm00001eb403850 Zea mays HOM05D006269 ORTHO05D001487 3.2e-18 97.8 106 51.9
Phvul.010G106600 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 4.2e-18 97.4 411 27.7
Zm00001eb364900 Zea mays HOM05D006269 ORTHO05D001487 9.4e-18 96.3 150 42.0
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.2e-17 95.9 338 28.4
Zm00001eb380100 Zea mays HOM05D006269 ORTHO05D001487 6.1e-17 93.6 150 40.7
MBI06_g04303_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 8.0e-17 93.2 423 25.1
Glyma.18G186200 Glycine max HOM05D006269 ORTHO05D001487 4.0e-16 90.9 209 32.5
Zm00001eb095310 Zea mays HOM05D006269 ORTHO05D001487 2.6e-15 88.2 280 31.8
Nitab4.5_0000305g0340 Nicotiana tabacum HOM05D006269 ORTHO05D001487 1.8e-13 82.0 424 25.5
SEGI_19997 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.2e-12 79.3 136 34.6
Nitab4.5_0000305g0330 Nicotiana tabacum HOM05D006269 ORTHO05D001487 1.6e-12 79.0 99 43.4
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 2.7e-12 78.2 167 32.3
AagrBONN_evm.TU.Sc2ySwM_228.5492 Anthoceros agrestis HOM05D006269 ORTHO05D001487 3.8e-11 74.3 172 33.7
Oeu004921.1 Olea europaea HOM05D006269 ORTHO05D001487 3.8e-11 74.3 177 35.6
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 3.8e-11 74.3 151 35.8
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 5.0e-11 73.9 222 28.4
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 5.0e-11 73.9 144 31.9
AagrBONN_evm.TU.Sc2ySwM_368.336 Anthoceros agrestis HOM05D006269 ORTHO05D001487 6.5e-11 73.6 295 26.8
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.5e-10 71.6 122 34.4
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 4.2e-10 70.9 140 35.7
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 7.2e-10 70.1 104 41.3
Pp3c4_24420 Physcomitrium patens HOM05D006269 ORTHO05D001487 7.2e-10 70.1 143 36.4
Pp3c26_10790 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.1e-09 68.6 163 31.3
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 3.6e-09 67.8 134 35.1
SEGI_14808 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.6e-09 67.8 124 31.5
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.6e-09 67.8 173 30.1
SEGI_09232 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 4.7e-09 67.4 179 30.2
Pp3c7_10910 Physcomitrium patens HOM05D002157 ORTHO05D002197 8.0e-09 66.6 104 37.5
SEGI_15116 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.0e-08 66.2 130 34.6
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 1.0e-08 66.2 134 35.8
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 1.0e-08 66.2 170 30.0
Mapoly0097s0036 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.8e-08 65.5 208 30.8
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 3.0e-08 64.7 130 32.3
SEGI_05188 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.0e-08 64.7 126 34.1
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 4.0e-08 64.3 130 31.5
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 5.2e-08 63.9 154 29.9
Pp3c19_7760 Physcomitrium patens HOM05D006269 ORTHO05D001487 5.2e-08 63.9 105 39.0
SMO172G0062 Selaginella moellendorffii HOM05D006269 ORTHO05D001487 6.8e-08 63.5 136 35.3
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 8.8e-08 63.2 152 32.9
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 8.8e-08 63.2 112 33.9
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 4.4e-07 60.8 102 36.3
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 5.7e-07 60.5 115 40.0
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 5.7e-07 60.5 115 37.4
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 5.7e-07 60.5 122 37.7
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 5.7e-07 60.5 103 35.0
Zm00001eb382930 Zea mays HOM05D006269 ORTHO05D001487 5.7e-07 60.5 167 32.3
Potri.003G167500 Populus trichocarpa HOM05D002685 ORTHO05D001487 7.5e-07 60.1 106 36.8
Prupe.1G221500 Prunus persica HOM05D002685 ORTHO05D001487 7.5e-07 60.1 101 34.7
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 9.8e-07 59.7 135 29.6
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 9.8e-07 59.7 175 29.7
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 9.8e-07 59.7 133 30.1
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 1.7e-06 58.9 127 37.0
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.7e-06 58.9 103 35.0
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.7e-06 58.9 103 35.0
Pp3c21_6840 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.7e-06 58.9 103 38.8
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 2.2e-06 58.5 126 31.0
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.2e-06 58.5 121 33.1
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 2.8e-06 58.2 102 34.3
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.8e-06 58.2 102 34.3
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 3.7e-06 57.8 114 32.5
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 3.7e-06 57.8 100 36.0
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 3.7e-06 57.8 156 27.6
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 3.7e-06 57.8 100 35.0
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 4.9e-06 57.4 150 31.3
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 4.9e-06 57.4 102 34.3
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 4.9e-06 57.4 110 34.5
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 6.3e-06 57.0 150 30.0
Lsat_1_v5_gn_4_2061 Lactuca sativa HOM05D002685 ORTHO05D001487 6.3e-06 57.0 105 32.4
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 6.3e-06 57.0 126 33.3
Atru.chr1.2459 Acer truncatum HOM05D002685 ORTHO05D001487 8.3e-06 56.6 114 32.5
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 8.3e-06 56.6 103 35.0
Dinv11706 Davidia involucrata HOM05D002685 ORTHO05D001487 8.3e-06 56.6 130 30.8
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 8.3e-06 56.6 105 32.4
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 8.3e-06 56.6 104 31.7
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 8.3e-06 56.6 152 28.9
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 8.3e-06 56.6 104 31.7
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 8.3e-06 56.6 132 31.1
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 8.3e-06 56.6 98 33.7


User provided reference genes

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