Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 5.4e-251 870.5 448 100.0
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 8.7e-225 783.5 448 91.7
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 3.4e-221 771.5 449 90.0
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.2e-219 764.6 450 88.9
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 7.2e-219 763.8 451 89.4
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.9e-217 758.1 449 87.3
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 3.9e-217 758.1 449 87.8
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 5.1e-217 757.7 449 87.8
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 6.7e-217 757.3 449 87.8
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 6.3e-215 750.7 452 88.1
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 6.3e-215 750.7 452 88.1
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 9.1e-214 746.9 450 88.7
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 4.1e-206 721.5 451 84.7
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 1.2e-205 719.9 451 84.0
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 3.2e-203 711.8 449 84.0
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 3.9e-201 704.9 452 83.6
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.7e-196 689.5 449 82.0
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 5.2e-193 677.9 441 82.1
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.0e-185 653.7 449 75.1
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.9e-167 592.4 371 85.2
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 7.0e-158 561.2 449 65.3
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.6e-157 560.1 446 66.4
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 3.5e-157 558.9 450 64.0
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 8.6e-156 554.3 448 65.2
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 8.6e-156 554.3 450 64.0
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.5e-155 552.7 446 64.6
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.6e-154 548.9 447 63.8
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.1e-153 547.4 446 63.7
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 2.3e-153 546.2 455 61.8
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 2.0e-152 543.1 447 64.7
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.4e-152 542.0 451 63.6
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 7.5e-152 541.2 446 64.1
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 9.9e-152 540.8 445 64.9
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 9.9e-152 540.8 474 63.3
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.9e-151 539.3 453 62.0
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 6.4e-151 538.1 448 64.7
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.1e-150 537.3 460 60.9
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.4e-150 537.0 444 63.7
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.9e-150 536.6 472 61.9
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.2e-149 533.9 440 64.3
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.6e-149 533.5 457 63.9
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 2.1e-149 533.1 427 65.6
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 6.0e-149 531.6 436 64.2
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 1.0e-148 530.8 449 61.2
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 1.3e-148 530.4 475 61.1
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.3e-148 529.6 448 62.3
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.3e-148 529.6 492 59.8
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 6.6e-148 528.1 443 61.9
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.9e-147 526.6 449 61.5
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 2.5e-147 526.2 432 63.0
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 2.1e-146 523.1 450 63.1
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 3.6e-146 522.3 447 61.3
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 3.6e-146 522.3 439 62.0
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.4e-145 520.4 449 61.9
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.8e-145 520.0 463 61.6
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.4e-145 519.6 461 61.0
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 3.1e-145 519.2 448 61.4
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 3.1e-145 519.2 429 63.6
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 4.0e-145 518.8 449 61.9
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 6.8e-145 518.1 436 61.7
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 6.8e-145 518.1 451 61.4
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 2.6e-144 516.2 435 62.3
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 2.6e-144 516.2 462 61.5
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 3.4e-144 515.8 434 61.5
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 3.4e-144 515.8 439 62.4
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 4.4e-144 515.4 438 62.1
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 4.4e-144 515.4 469 60.8
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 5.8e-144 515.0 430 62.1
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.3e-143 513.8 451 61.6
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.9e-143 512.7 450 62.0
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 6.4e-143 511.5 490 57.3
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 8.4e-143 511.1 438 61.2
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 8.4e-143 511.1 431 62.6
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 5.4e-142 508.4 451 62.3
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 9.2e-142 507.7 452 62.4
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 1.2e-141 507.3 455 62.2
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 2.1e-141 506.5 469 60.3
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 6.0e-141 505.0 431 61.0
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 7.8e-141 504.6 515 54.2
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 5.6e-139 498.4 458 60.5
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.6e-138 496.9 455 58.9
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.8e-138 496.1 435 60.7
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.1e-137 494.2 448 59.4
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.8e-137 493.4 453 58.7
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.2e-136 490.7 438 59.1
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 2.6e-136 489.6 439 58.8
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 7.6e-136 488.0 445 59.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.3e-135 487.3 417 61.6
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.2e-135 486.5 444 58.8
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 7.8e-133 478.0 409 61.6
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 1.1e-131 474.2 442 56.6
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.2e-128 464.2 389 63.2
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 2.0e-128 463.4 464 55.4
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.6e-128 463.0 465 55.5
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.3e-127 460.7 447 57.0
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.7e-127 460.3 503 51.5
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 2.2e-127 459.9 437 55.8
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 8.4e-127 458.0 420 60.0
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.1e-126 457.6 449 55.9
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.6e-125 453.8 468 54.9
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 7.9e-125 451.4 465 55.1
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 4.8e-122 442.2 473 52.9
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 4.0e-121 439.1 347 66.6
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.0e-120 436.8 443 56.9
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.4e-118 430.6 447 53.5
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.2e-117 427.6 428 54.4
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.2e-101 374.4 470 46.2
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.0e-100 369.8 296 65.2
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 3.4e-96 356.3 354 55.1
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 4.5e-96 355.9 448 47.1
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 1.6e-93 347.4 487 42.7
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 3.0e-92 343.2 346 55.2
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 3.9e-92 342.8 296 62.2
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 7.4e-91 338.6 522 39.3
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.2e-88 331.3 471 42.0
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 7.7e-88 328.6 285 62.5
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.7e-85 319.3 243 73.3
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.3e-74 284.6 625 33.8
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 8.8e-68 261.9 532 36.1
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.5e-54 217.2 448 35.0
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 5.6e-54 216.1 490 33.3
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 6.1e-53 212.6 458 32.1
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 6.4e-50 202.6 124 81.5
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.1e-44 185.3 162 62.3
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 4.6e-40 169.9 238 45.8
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 1.7e-39 167.9 187 59.9
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.1e-38 165.2 187 58.8
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 1.6e-37 161.4 174 56.9
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 3.2e-33 147.1 225 43.1
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 2.4e-25 120.9 114 60.5
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 3.5e-24 117.1 116 59.5
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 3.4e-19 100.5 150 44.0
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.2e-18 97.8 99 53.5
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 7.1e-17 92.8 67 62.7
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.6e-16 90.1 93 58.1
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.7e-15 88.2 87 62.1
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.7e-15 88.2 93 57.0
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 5.1e-15 86.7 73 56.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 2.5e-14 84.3 127 40.9
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.1e-13 81.3 244 29.5
C04p27960 Brassica napus HOM05D004999 ORTHO05D024529 1.4e-12 78.6 141 44.0
BraA09t38023Z Brassica rapa HOM05D004999 ORTHO05D021597 3.8e-10 70.5 90 48.9
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 1.4e-09 68.6 53 62.3
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.9e-09 68.2 36 80.6
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 4.2e-09 67.0 79 55.7
C04p06640 Brassica napus HOM05D048016 ORTHO05D041591 9.3e-09 65.9 55 61.8
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 2.1e-08 64.7 114 34.2
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 2.1e-08 64.7 59 61.0
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 4.6e-08 63.5 34 82.4
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.5e-06 58.5 29 93.1


User provided reference genes

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