Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 8.6e-210 733.4 371 100.0
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 5.6e-185 651.0 371 89.8
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 8.4e-181 637.1 373 87.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 7.1e-180 634.0 372 86.3
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 2.7e-179 632.1 372 86.0
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 7.8e-179 630.6 371 85.7
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.7e-178 629.4 373 86.9
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.7e-178 629.4 374 86.9
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.3e-177 624.8 372 85.5
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.3e-176 623.2 371 84.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.6e-176 622.9 374 86.9
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.8e-176 622.1 375 86.7
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 4.8e-176 621.3 372 84.9
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 8.1e-176 620.5 371 83.3
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 4.3e-169 598.2 372 83.6
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.6e-168 596.3 382 85.3
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 6.4e-165 584.3 351 84.3
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.4e-164 582.4 374 79.9
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 1.8e-127 459.9 293 80.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.8e-127 459.9 377 63.7
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 9.1e-127 457.6 374 63.6
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 7.7e-126 454.5 376 63.8
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 2.2e-125 453.0 376 62.2
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.9e-125 452.6 376 62.0
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 8.5e-125 451.1 376 63.6
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.1e-124 450.7 377 63.7
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 9.4e-124 447.6 377 63.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.2e-123 447.2 378 61.1
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.1e-123 446.4 378 61.6
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.1e-123 446.4 377 62.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.4e-122 443.7 378 60.8
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.8e-122 443.4 338 67.8
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 2.3e-122 443.0 376 60.9
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.0e-122 442.6 381 62.2
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 5.2e-122 441.8 377 61.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.6e-121 439.5 383 59.8
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.3e-121 439.1 378 60.8
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 3.3e-121 439.1 378 61.1
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.4e-121 438.7 380 61.3
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 3.7e-120 435.6 375 59.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.7e-120 435.6 376 61.4
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 4.1e-119 432.2 374 58.6
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 4.1e-119 432.2 378 58.7
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.2e-118 430.6 377 59.4
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.0e-118 429.9 375 58.9
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.7e-118 429.5 374 61.8
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.0e-117 427.6 376 59.6
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.8e-117 425.6 377 58.4
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.8e-117 425.6 378 59.5
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 8.5e-117 424.5 378 59.8
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.5e-116 422.9 375 57.1
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.5e-116 422.9 374 58.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 2.5e-116 422.9 374 58.6
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.2e-116 422.2 377 58.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 4.2e-116 422.2 375 57.9
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 2.3e-114 416.4 378 58.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.2e-113 414.1 375 57.9
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.6e-113 412.9 374 57.0
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.4e-113 412.1 369 57.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 7.5e-113 411.4 382 57.1
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 7.5e-113 411.4 378 58.2
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.2e-112 409.8 376 57.4
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.4e-111 407.1 378 57.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.8e-111 406.8 378 57.4
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-111 406.0 374 57.0
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-111 406.0 374 57.0
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 5.4e-111 405.2 372 56.2
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.6e-110 403.7 370 57.0
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 5.9e-110 401.7 377 58.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 7.7e-110 401.4 374 56.1
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 7.7e-110 401.4 377 56.5
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.3e-109 400.6 378 56.3
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 6.5e-109 398.3 374 56.1
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 6.5e-109 398.3 379 56.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.5e-109 398.3 378 55.0
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 8.5e-109 397.9 375 53.9
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.1e-108 397.5 379 56.5
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.5e-108 397.1 377 57.0
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 3.2e-108 396.0 379 55.9
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 7.2e-108 394.8 373 57.1
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 9.4e-108 394.4 418 50.7
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.0e-106 391.0 362 57.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 3.4e-105 386.0 406 52.5
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.3e-104 384.0 376 54.5
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.7e-104 383.6 377 54.6
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.1e-103 380.9 356 56.2
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.4e-103 380.6 373 55.2
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.8e-103 380.2 351 57.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 3.1e-103 379.4 377 54.4
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 7.0e-103 378.3 366 54.6
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.0e-102 376.7 348 57.8
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 5.9e-102 375.2 351 55.8
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.0e-101 374.4 355 55.8
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 5.0e-101 372.1 377 53.8
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 6.6e-101 371.7 353 56.4
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 3.6e-99 365.9 377 52.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.1e-99 365.2 326 56.1
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 6.8e-98 361.7 352 54.8
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 6.8e-98 361.7 392 53.1
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.2e-97 360.9 374 54.5
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 5.7e-97 358.6 378 53.2
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.9e-96 356.3 336 56.8
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 6.4e-96 355.1 336 55.7
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 6.4e-96 355.1 376 50.5
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.2e-95 352.8 378 49.5
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 7.0e-95 351.7 378 49.7
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 7.0e-95 351.7 378 48.9
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 4.6e-94 349.0 350 54.6
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.3e-93 346.7 378 50.8
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.3e-93 346.7 331 56.8
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.6e-93 344.7 399 48.1
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.1e-92 344.4 299 59.9
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.6e-91 340.5 369 52.0
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.1e-91 340.1 379 49.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 5.8e-89 332.0 342 55.0
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 7.5e-89 331.6 354 50.6
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.4e-87 327.4 386 46.4
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.4e-87 326.6 331 53.8
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.2e-86 324.3 374 47.6
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 2.8e-83 313.2 308 54.9
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 4.0e-74 282.7 385 41.8
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 4.4e-73 279.3 344 45.6
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.9e-73 278.1 378 45.5
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.6e-69 265.4 246 54.9
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.2e-67 261.2 485 36.7
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.8e-66 257.3 388 39.9
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.0e-65 253.8 413 39.0
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 6.4e-64 248.8 307 48.2
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.4e-63 247.7 280 50.7
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.4e-63 247.7 246 54.9
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.1e-62 243.8 393 37.7
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.0e-61 240.0 294 48.3
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.0e-57 227.3 259 50.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.7e-54 216.9 244 50.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 8.7e-53 211.8 339 36.6
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 9.0e-50 201.8 388 34.0
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.2e-49 201.4 196 50.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.3e-48 198.0 230 50.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 8.4e-48 195.3 268 43.7
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.2e-47 193.4 259 47.1
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.1e-47 192.2 212 50.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.6e-43 181.0 149 59.1
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.9e-37 159.8 139 56.1
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.4e-34 150.6 150 59.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.0e-34 148.7 117 63.2
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.9e-24 117.1 73 69.9
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.8e-24 116.7 121 52.9
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.1e-22 110.9 437 24.0
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.5e-20 104.8 179 37.4
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-18 97.4 57 80.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.8e-10 71.2 42 78.6
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 4.1e-10 70.1 74 50.0
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 5.9e-09 66.2 51 60.8
BcaC04g20550 Brassica carinata HOM05D016321 ORTHO05D090386 1.6e-06 58.2 74 48.6


User provided reference genes

Program Settings