Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 4.5e-242 840.9 441 100.0
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 4.9e-212 741.1 432 90.7
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 3.2e-211 738.4 432 89.8
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 3.0e-209 731.9 432 89.1
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 6.6e-209 730.7 433 90.1
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.2e-207 726.5 432 89.1
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.2e-207 726.5 432 89.1
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.2e-204 715.7 434 87.1
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 3.8e-204 714.9 433 88.7
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 4.9e-204 714.5 434 87.3
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.9e-200 702.6 432 86.6
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 3.3e-200 701.8 434 86.4
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.9e-188 661.4 432 81.5
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.5e-157 560.1 397 74.3
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 3.0e-129 466.1 436 58.9
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.2e-128 464.2 433 58.2
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.5e-123 447.2 432 56.7
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 3.0e-121 439.5 429 54.8
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 4.0e-121 439.1 432 56.0
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 5.2e-121 438.7 435 55.4
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.0e-120 436.8 437 55.1
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.3e-119 434.1 432 53.5
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 6.3e-119 431.8 431 55.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 6.3e-119 431.8 433 55.2
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 6.3e-119 431.8 405 58.3
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 8.3e-119 431.4 430 57.0
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.8e-118 430.3 439 53.8
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.8e-118 430.3 438 53.0
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 9.2e-118 427.9 442 53.6
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 9.2e-118 427.9 431 54.3
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.2e-117 427.6 435 55.2
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.6e-117 427.2 443 54.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 7.8e-117 424.9 443 54.0
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.3e-116 424.1 412 54.4
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.9e-116 422.9 436 53.4
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 6.6e-116 421.8 435 51.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.9e-115 420.2 412 54.1
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.9e-115 420.2 436 53.2
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.2e-114 417.5 433 52.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.6e-114 416.0 433 51.7
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.7e-114 415.6 435 51.0
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 6.1e-114 415.2 432 53.2
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.3e-113 413.3 437 54.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.3e-113 413.3 435 50.8
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 3.1e-113 412.9 418 54.5
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 6.8e-113 411.8 430 53.3
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 8.9e-113 411.4 435 50.6
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.4e-112 409.5 448 50.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 5.8e-112 408.7 435 49.2
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 9.8e-112 407.9 405 56.0
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-111 406.8 448 50.4
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.9e-111 405.6 448 49.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 6.4e-111 405.2 437 52.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 8.3e-111 404.8 435 50.6
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.9e-110 403.7 436 50.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 9.5e-107 391.3 435 52.0
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.6e-106 389.4 436 51.8
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.6e-106 389.4 416 49.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 4.7e-106 389.0 432 51.9
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.1e-105 387.9 376 56.6
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.2e-104 384.4 419 53.9
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 3.4e-104 382.9 431 49.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.4e-102 377.5 435 47.1
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.4e-102 376.7 421 48.7
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 9.2e-102 374.8 409 51.8
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 9.2e-102 374.8 432 51.9
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 9.2e-102 374.8 440 46.6
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.2e-101 374.4 440 46.8
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.7e-101 373.2 439 49.4
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.9e-99 367.1 433 50.3
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.1e-98 363.6 392 49.2
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.3e-97 360.1 538 40.7
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.9e-96 354.8 421 47.3
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 4.9e-95 352.4 432 47.2
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 6.4e-95 352.1 361 56.0
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.4e-94 350.9 434 47.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 4.6e-93 345.9 345 53.6
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.6e-93 345.9 473 45.2
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.8e-93 345.1 428 47.2
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 2.5e-91 340.1 353 52.4
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.2e-88 331.3 408 45.3
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.0e-88 330.5 410 45.6
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.6e-88 330.1 428 47.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 8.4e-87 325.1 323 53.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 6.0e-85 318.9 402 46.8
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 3.0e-84 316.6 290 57.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 5.1e-84 315.8 414 46.6
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 7.3e-83 312.0 322 52.2
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.6e-82 309.7 355 50.1
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.4e-81 307.8 349 50.7
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 9.0e-81 305.1 413 43.8
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.2e-80 304.7 350 49.1
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 5.8e-80 302.4 463 43.0
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.9e-79 300.1 407 44.2
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 4.6e-77 292.7 374 47.6
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.3e-76 291.2 336 48.5
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 8.7e-76 288.5 480 41.5
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.8e-74 283.5 343 47.2
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.6e-74 283.1 436 41.5
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 1.1e-73 281.6 389 45.2
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.0e-73 279.6 291 49.5
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 8.4e-71 271.9 276 51.4
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.7e-69 266.9 169 81.7
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 4.6e-69 266.2 446 40.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 4.6e-69 266.2 279 50.9
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.6e-64 248.8 298 48.3
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-63 248.1 261 49.8
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.3e-60 238.0 254 49.2
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 2.5e-59 233.8 212 58.0
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 8.7e-52 208.8 409 34.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.3e-51 206.5 282 44.3
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.6e-50 204.5 264 45.8
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.8e-50 203.8 343 39.4
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.2e-47 194.1 276 44.6
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 6.5e-47 192.6 296 39.2
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 7.4e-35 152.5 459 29.6
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.8e-33 147.9 159 47.8
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.9e-31 140.6 176 46.6
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.5e-30 136.3 151 53.0
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-29 134.8 142 52.8
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 3.6e-29 133.7 493 27.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-27 128.3 160 50.0
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.2e-22 110.5 462 27.7
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-21 108.6 144 45.1
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 2.3e-20 104.4 116 52.6
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 6.8e-20 102.8 376 29.3
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.8e-20 102.4 63 81.0
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 8.8e-20 102.4 106 50.0
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 3.7e-18 97.1 83 59.0
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.3e-15 88.6 126 38.9
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 5.2e-12 76.6 54 68.5
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 4.4e-11 73.6 78 52.6
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 9.8e-11 72.4 52 63.5
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.7e-10 71.6 81 50.6
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.0e-07 60.1 57 54.4
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.0e-07 60.1 57 54.4
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.0e-07 60.1 57 54.4
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.0e-07 60.1 46 58.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.6e-07 59.7 57 54.4
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 9.5e-06 55.8 32 78.1


User provided reference genes

Program Settings