Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 2.4e-226 788.5 393 100.0
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 5.3e-210 734.2 394 94.2
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.6e-209 732.6 394 92.4
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 6.1e-206 720.7 396 92.2
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.0e-205 718.4 396 91.9
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.3e-204 714.9 395 90.6
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 4.0e-197 691.4 395 88.9
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 4.0e-197 691.4 395 88.9
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 5.2e-197 691.0 393 86.8
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 7.0e-194 680.6 394 86.3
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 8.0e-190 667.2 385 87.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 4.9e-171 604.7 398 76.1
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.0e-148 529.6 408 65.2
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 6.4e-147 524.6 408 64.5
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.9e-146 523.1 392 66.8
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 9.3e-146 520.8 408 63.7
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.2e-145 520.4 408 63.5
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 4.6e-145 518.5 391 65.2
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.9e-144 515.4 396 64.9
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.5e-143 513.5 398 67.1
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 3.3e-143 512.3 390 65.1
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 5.6e-143 511.5 392 66.1
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 7.3e-143 511.1 374 67.9
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 4.0e-141 505.4 392 65.1
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.2e-140 503.8 385 65.5
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.2e-140 503.8 390 65.4
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.5e-140 503.4 392 64.8
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.5e-140 503.4 390 65.9
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.5e-140 503.4 392 66.6
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.0e-140 503.1 390 66.4
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 4.5e-140 501.9 390 64.9
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 5.8e-140 501.5 391 65.0
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 2.2e-139 499.6 388 65.7
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 2.9e-139 499.2 386 64.0
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 3.8e-139 498.8 348 72.4
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.8e-139 498.8 390 65.4
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.8e-139 498.8 390 65.6
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 6.4e-139 498.0 392 64.3
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 1.4e-138 496.9 383 64.5
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.9e-138 496.5 406 62.8
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 2.4e-138 496.1 383 64.8
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.2e-138 495.7 390 64.1
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 3.2e-138 495.7 392 64.5
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 9.3e-138 494.2 383 63.7
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 9.3e-138 494.2 383 64.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.6e-137 493.4 388 63.7
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.6e-137 493.4 391 64.7
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.7e-137 492.7 412 62.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 4.6e-137 491.9 391 62.9
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 4.6e-137 491.9 383 64.5
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.9e-137 491.1 344 70.6
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.3e-136 490.3 389 62.7
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.3e-136 490.3 392 62.8
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.3e-136 490.3 391 62.9
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.8e-136 490.0 389 63.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.3e-136 489.6 392 63.8
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 3.0e-136 489.2 390 63.1
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 3.9e-136 488.8 390 63.1
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 5.1e-136 488.4 392 63.8
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.5e-135 486.9 388 63.4
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.9e-135 486.5 390 61.8
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 5.6e-135 485.0 389 63.8
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 7.4e-135 484.6 391 64.5
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 7.4e-135 484.6 387 62.3
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 1.3e-134 483.8 404 62.1
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.8e-134 482.6 385 62.9
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 3.6e-134 482.3 389 62.7
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 4.8e-134 481.9 387 62.0
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 6.2e-134 481.5 387 63.3
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.1e-133 480.7 418 59.1
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 6.9e-133 478.0 388 61.9
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 2.0e-132 476.5 379 63.3
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 7.6e-132 474.6 378 63.2
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 2.2e-131 473.0 387 60.5
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 3.8e-131 472.2 391 61.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 1.1e-130 470.7 349 65.6
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.4e-130 470.3 378 61.6
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.9e-130 469.9 391 61.4
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 1.9e-130 469.9 351 66.4
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.3e-128 463.8 391 62.1
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.8e-128 463.4 378 62.4
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 2.8e-126 456.1 387 59.2
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 3.1e-125 452.6 352 64.5
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 1.7e-123 446.8 390 62.1
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.1e-122 444.1 377 60.5
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.5e-121 439.1 365 60.8
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.5e-119 433.7 347 62.8
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.9e-119 433.3 391 58.6
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 5.7e-119 431.8 336 63.1
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 4.8e-118 428.7 410 55.4
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 4.8e-118 428.7 391 58.3
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 5.3e-117 425.2 420 53.3
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 7.2e-114 414.8 343 61.2
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 7.2e-114 414.8 345 61.7
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 5.3e-109 398.7 337 62.0
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.2e-107 393.3 263 71.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 6.5e-107 391.7 322 61.8
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.2e-106 389.4 200 94.0
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 3.0e-104 382.9 354 56.5
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 3.1e-101 372.9 195 88.7
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 5.3e-101 372.1 251 70.1
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.2e-98 362.8 306 61.4
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.2e-94 350.1 383 48.6
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.8e-88 330.5 275 60.7
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.7e-86 323.9 248 65.3
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 6.3e-78 295.4 194 79.4
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 3.1e-77 293.1 163 82.2
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 7.7e-76 288.5 320 48.1
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 4.7e-73 279.3 280 47.9
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 8.0e-65 251.9 256 57.0
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 4.0e-64 249.6 187 64.2
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 3.7e-62 243.0 176 67.0
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.5e-58 231.1 130 79.2
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 5.2e-56 222.6 219 48.9
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 2.2e-54 217.2 215 56.7
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 1.4e-48 198.0 363 35.8
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.5e-47 194.5 113 75.2
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 6.8e-40 169.1 132 61.4
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 8.9e-40 168.7 132 61.4
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 2.6e-39 167.2 131 60.3
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.9e-35 153.3 135 60.7
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.1e-32 143.7 161 47.8
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.4e-29 134.8 181 42.5
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 4.2e-29 133.3 84 73.8
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 9.3e-29 132.1 197 39.6
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 2.7e-28 130.6 237 34.6
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.6e-23 114.0 63 82.5
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 4.5e-23 113.2 74 68.9
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.5e-23 113.2 97 61.9
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.3e-22 111.7 98 57.1
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 6.2e-17 92.8 72 65.3
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 4.0e-16 90.1 111 47.7
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 5.8e-15 86.3 45 82.2
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 7.1e-13 79.3 96 47.9
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 4.6e-12 76.6 45 71.1
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 2.4e-08 64.3 105 34.3
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 4.0e-08 63.5 61 52.5
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 4.5e-07 60.1 35 65.7


User provided reference genes

Program Settings