Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 7.3e-62 241.1 202 100.0
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-54 215.3 205 93.7
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 9.5e-54 214.2 205 90.7
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 6.2e-53 211.5 202 81.7
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 5.2e-52 208.4 202 82.7
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 1.3e-50 203.8 202 88.1
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 3.7e-50 202.2 202 79.7
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 8.3e-50 201.1 109 95.4
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 8.3e-50 201.1 109 95.4
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 8.3e-50 201.1 109 95.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 1.1e-49 200.7 204 74.5
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.9e-49 199.9 202 87.6
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 2.4e-49 199.5 202 76.2
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-49 199.1 202 74.8
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.2e-48 197.2 202 75.7
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 2.1e-48 196.4 110 94.5
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 2.1e-48 196.4 110 94.5
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.7e-48 196.1 107 90.7
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 4.6e-48 195.3 202 76.7
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 8.6e-47 191.0 106 88.7
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.3e-46 189.1 106 87.7
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 4.7e-45 185.3 107 85.0
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 6.2e-45 184.9 202 77.7
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 8.1e-45 184.5 107 84.1
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 8.1e-45 184.5 107 84.1
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 8.1e-45 184.5 107 84.1
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.1e-44 184.1 202 82.2
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.4e-44 183.7 203 84.7
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 1.8e-44 183.3 202 78.2
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.8e-44 183.3 203 84.7
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 3.1e-44 182.6 202 80.7
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 4.0e-44 182.2 107 83.2
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 4.0e-44 182.2 107 83.2
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 4.0e-44 182.2 206 79.1
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 5.2e-44 181.8 202 69.3
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 6.8e-44 181.4 105 82.9
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 6.8e-44 181.4 105 82.9
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 8.9e-44 181.0 106 83.0
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 8.9e-44 181.0 103 85.4
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 8.9e-44 181.0 107 83.2
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.2e-43 180.6 202 80.2
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.2e-43 180.6 106 83.0
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.2e-43 180.6 105 83.8
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.5e-43 180.3 202 67.3
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.6e-43 179.5 105 81.9
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.6e-43 179.5 105 81.9
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 3.4e-43 179.1 106 81.1
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.4e-43 179.1 106 81.1
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.4e-43 179.1 106 81.1
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 3.4e-43 179.1 107 81.3
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 7.6e-43 177.9 103 83.5
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.6e-43 177.9 202 82.7
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 7.6e-43 177.9 202 74.8
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.9e-43 177.6 106 79.2
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 9.9e-43 177.6 106 80.2
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 9.9e-43 177.6 106 83.0
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.3e-42 177.2 106 80.2
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.7e-42 176.8 106 82.1
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.7e-42 176.8 106 81.1
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 2.2e-42 176.4 106 81.1
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 2.9e-42 176.0 102 82.4
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 2.9e-42 176.0 202 74.8
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 2.9e-42 176.0 106 80.2
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 3.8e-42 175.6 107 79.4
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.8e-42 175.6 106 80.2
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.8e-42 175.6 106 80.2
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 3.8e-42 175.6 202 80.7
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 4.9e-42 175.3 202 74.3
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 4.9e-42 175.3 105 79.0
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 4.9e-42 175.3 106 80.2
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 4.9e-42 175.3 107 80.4
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 4.9e-42 175.3 107 80.4
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 4.9e-42 175.3 202 65.8
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.4e-42 174.9 203 74.4
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 6.4e-42 174.9 102 82.4
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 6.4e-42 174.9 202 74.3
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 6.4e-42 174.9 107 82.2
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.1e-41 174.1 107 76.6
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.4e-41 173.7 106 79.2
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.9e-41 173.3 106 79.2
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.4e-41 172.9 113 77.0
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 2.4e-41 172.9 103 80.6
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 3.2e-41 172.6 107 77.6
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 4.2e-41 172.2 105 77.1
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 4.2e-41 172.2 202 72.3
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.4e-41 171.8 106 78.3
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 7.1e-41 171.4 107 78.5
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 7.1e-41 171.4 106 77.4
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 7.1e-41 171.4 106 77.4
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 7.1e-41 171.4 106 77.4
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 7.1e-41 171.4 106 79.2
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 9.3e-41 171.0 204 77.5
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 1.6e-40 170.2 108 78.7
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 1.6e-40 170.2 108 78.7
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 1.6e-40 170.2 107 75.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 2.7e-40 169.5 204 78.9
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 4.6e-40 168.7 103 78.6
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 7.8e-40 167.9 106 75.5
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.0e-39 167.5 101 80.2
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.3e-39 167.2 103 79.6
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-39 167.2 103 78.6
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-39 167.2 103 78.6
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.3e-39 166.4 103 76.7
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 3.0e-39 166.0 202 80.7
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 3.9e-39 165.6 106 77.4
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 5.1e-39 165.2 105 80.0
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 8.7e-39 164.5 107 77.6
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 8.7e-39 164.5 101 78.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 8.7e-39 164.5 101 78.2
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.1e-38 164.1 106 78.3
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.3e-38 162.5 109 74.3
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.3e-38 162.5 109 74.3
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.6e-37 160.2 98 79.6
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 1.4e-36 157.1 133 63.9
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 4.4e-35 152.1 130 60.8
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.9e-34 148.7 164 83.5
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 8.4e-34 147.9 109 65.1
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 3.2e-33 146.0 109 64.2
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 4.6e-32 142.1 106 67.0
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 4.6e-32 142.1 164 50.0
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 7.8e-32 141.4 184 47.3
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.3e-31 140.6 78 89.7
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 1.3e-31 140.6 102 67.6
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.3e-31 139.8 77 89.6
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 5.6e-30 135.2 78 84.6
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 2.1e-29 133.3 191 43.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 3.6e-29 132.5 77 84.4
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.4e-28 130.6 77 83.1
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 5.3e-28 128.6 79 75.9
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.7e-26 123.6 120 59.2
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 6.4e-26 121.7 172 66.9
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.1e-25 120.9 71 78.9
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.9e-25 120.2 225 36.9
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 4.2e-25 119.0 157 58.6
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 1.0e-23 114.4 65 84.6
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 1.0e-23 114.4 65 84.6
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 4.3e-22 109.0 83 65.1
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 7.4e-22 108.2 173 42.2
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 7.4e-22 108.2 173 42.2
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 4.0e-20 102.4 82 68.3
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-19 100.9 78 69.2
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 4.9e-18 95.5 74 60.8
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 8.4e-18 94.7 102 51.0
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 7.1e-17 91.7 134 47.8
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 2.1e-16 90.1 70 67.1
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 4.6e-16 89.0 136 80.9
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 1.3e-15 87.4 107 52.3
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 8.7e-15 84.7 141 78.0
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 1.1e-14 84.3 252 46.4
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-12 77.4 139 63.3
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 2.4e-12 76.6 138 84.1
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 2.2e-10 70.1 140 61.4
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 5.0e-10 68.9 140 57.9
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 5.0e-10 68.9 34 88.2
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.1e-09 67.8 43 76.7
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-09 67.0 41 82.9
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 2.5e-09 66.6 43 79.1
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 3.2e-09 66.2 88 46.6
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-08 63.2 41 80.5
BcaB05g25109 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-07 60.5 45 75.6
BcaB05g25118 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-07 60.5 45 75.6
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.8e-07 60.5 43 72.1
BcaB05g25110 Brassica carinata HOM05D004131 ORTHO05D004778 5.1e-07 58.9 45 73.3
BcaB05g25113 Brassica carinata HOM05D004131 ORTHO05D004778 5.1e-07 58.9 45 73.3
BcaB05g25117 Brassica carinata HOM05D004131 ORTHO05D004778 6.7e-07 58.5 45 73.3


User provided reference genes

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