Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 4.1e-105 384.8 205 100.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 7.3e-94 347.4 205 83.4
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 6.2e-93 344.4 205 83.4
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 5.2e-92 341.3 206 82.5
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 8.9e-92 340.5 206 82.0
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 2.2e-90 335.9 200 83.0
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 2.2e-90 335.9 200 83.0
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 4.2e-89 331.6 203 84.7
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.4e-84 316.6 196 82.1
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.4e-84 316.6 196 82.1
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.4e-84 316.6 196 82.1
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 6.9e-84 314.3 193 79.3
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.2e-83 313.5 192 81.8
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.0e-83 312.8 192 81.8
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.4e-76 289.3 200 74.5
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.6e-75 285.8 202 72.3
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 6.7e-71 271.2 197 69.5
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 2.4e-68 262.7 194 65.5
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.0e-68 261.9 195 64.1
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 6.9e-68 261.2 192 66.7
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 2.0e-67 259.6 192 65.6
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 2.6e-67 259.2 190 66.3
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 4.5e-67 258.5 189 66.1
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 7.6e-67 257.7 192 65.6
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.0e-66 257.3 195 63.6
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.0e-66 257.3 192 66.1
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.3e-66 256.9 187 64.7
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 1.7e-66 256.5 187 65.8
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.7e-66 256.5 191 64.4
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 2.2e-66 256.1 190 64.2
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 2.2e-66 256.1 187 65.2
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 4.9e-66 255.0 192 64.6
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 8.4e-66 254.2 186 66.1
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 8.4e-66 254.2 203 63.1
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.1e-65 253.8 195 64.1
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 1.4e-65 253.4 191 62.8
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.4e-65 253.4 189 64.6
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.9e-65 253.1 191 64.4
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.9e-65 253.1 192 65.1
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.5e-65 252.7 192 63.0
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 3.2e-65 252.3 201 59.7
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.2e-65 252.3 187 65.2
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 4.2e-65 251.9 192 65.1
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 4.2e-65 251.9 189 64.6
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.2e-65 251.9 192 64.1
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.2e-65 251.9 192 64.1
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.2e-65 251.9 187 64.7
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 5.5e-65 251.5 189 63.5
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 5.5e-65 251.5 203 62.6
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 7.1e-65 251.1 151 76.8
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 7.1e-65 251.1 187 64.7
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 9.3e-65 250.8 192 63.5
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 9.3e-65 250.8 192 63.5
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 9.3e-65 250.8 186 66.7
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 9.3e-65 250.8 195 63.6
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.2e-64 250.4 191 61.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.2e-64 250.4 191 62.3
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.2e-64 250.4 189 65.1
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.6e-64 250.0 185 64.3
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.6e-64 250.0 200 62.5
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.6e-64 250.0 190 63.2
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.6e-64 250.0 190 63.2
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 2.1e-64 249.6 190 62.6
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 2.1e-64 249.6 192 63.5
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 2.7e-64 249.2 183 65.0
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 2.7e-64 249.2 185 65.9
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.0e-63 247.3 194 62.4
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-63 246.9 192 63.5
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.3e-63 246.9 190 62.6
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 1.8e-63 246.5 189 62.4
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.8e-63 246.5 190 63.2
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.8e-63 246.5 190 62.6
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 3.0e-63 245.7 204 58.8
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 3.0e-63 245.7 188 62.2
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.9e-63 245.4 192 61.5
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 5.1e-63 245.0 150 76.0
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 6.7e-63 244.6 188 61.7
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 8.7e-63 244.2 189 61.9
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.1e-62 243.8 191 61.8
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.5e-62 243.4 200 61.5
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.5e-62 243.4 190 62.6
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.5e-62 242.7 184 63.0
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 4.3e-62 241.9 190 64.2
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 5.7e-62 241.5 191 60.2
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 5.7e-62 241.5 188 63.3
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 2.8e-61 239.2 184 62.5
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 3.7e-61 238.8 187 62.6
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 6.3e-61 238.0 185 60.0
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 6.3e-61 238.0 192 60.9
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 8.2e-61 237.7 195 61.5
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.1e-60 237.3 186 60.8
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.4e-60 236.9 188 62.2
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.8e-60 236.5 188 62.2
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 6.9e-60 234.6 192 59.9
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 9.0e-60 234.2 183 62.3
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 7.6e-59 231.1 190 60.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.0e-58 230.7 149 67.8
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 6.5e-58 228.0 184 60.9
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 8.5e-58 227.6 187 58.8
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 3.6e-56 222.2 190 57.4
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 6.7e-55 218.0 190 56.8
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 4.3e-54 215.3 194 56.7
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 6.3e-53 211.5 123 75.6
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 9.1e-52 207.6 150 62.7
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 1.2e-51 207.2 147 67.3
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.5e-51 206.8 186 56.5
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 6.1e-48 194.9 200 56.5
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 6.1e-48 194.9 200 56.5
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.4e-47 193.7 150 62.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.8e-47 193.4 189 52.4
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 8.8e-47 191.0 123 73.2
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 8.8e-47 191.0 149 61.7
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.1e-46 190.7 122 73.0
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 2.0e-46 189.9 184 53.8
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 2.6e-46 189.5 150 60.7
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 9.7e-46 187.6 193 52.3
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 6.9e-44 181.4 146 60.3
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 6.9e-44 181.4 149 59.7
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 3.4e-43 179.1 191 48.2
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 4.7e-40 168.7 132 62.9
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 2.6e-35 152.9 128 54.7
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.9e-34 149.4 126 55.6
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.8e-34 149.1 189 47.1
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 8.5e-34 147.9 93 75.3
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 1.5e-33 147.1 149 55.0
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.0e-31 141.0 131 54.2
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 5.2e-31 138.7 92 69.6
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 3.3e-30 136.0 144 47.9
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 5.7e-30 135.2 84 73.8
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 3.8e-26 122.5 149 49.0
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 3.8e-26 122.5 149 49.0
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 5.0e-26 122.1 162 43.2
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 2.1e-24 116.7 61 95.1
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.6e-18 94.7 51 80.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 3.2e-17 92.8 114 37.7
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.9e-09 67.0 55 52.7


User provided reference genes

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