Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 0.0e+00 1184.9 632 100.0
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.9e-297 1025.4 633 85.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 6.4e-290 1000.3 634 85.5
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-289 998.8 633 85.2
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.2e-289 998.0 635 85.5
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 4.2e-289 997.7 635 85.5
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 7.1e-289 996.9 635 85.4
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.7e-288 995.0 630 84.0
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 3.2e-281 971.5 633 82.8
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.2e-280 969.5 630 82.7
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 3.6e-277 958.0 587 88.4
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 7.4e-254 880.6 637 74.9
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.9e-250 868.6 627 76.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.6e-202 707.6 639 68.2
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.4e-199 700.3 638 61.0
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.4e-196 690.3 636 58.6
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.4e-196 688.3 634 57.7
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 4.6e-195 685.3 633 60.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 3.3e-193 679.1 636 59.0
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 5.6e-193 678.3 632 60.3
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 5.6e-193 678.3 634 56.8
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.3e-191 672.9 640 56.2
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 4.0e-191 672.2 636 59.3
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.6e-190 669.5 632 58.4
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 7.5e-190 667.9 634 58.2
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 8.3e-189 664.5 634 58.2
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.1e-188 664.1 634 58.0
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.1e-188 664.1 634 58.0
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.1e-188 664.1 639 59.3
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.4e-188 663.7 634 58.0
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 4.1e-188 662.1 638 59.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.6e-187 660.2 624 58.7
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.0e-187 658.3 635 57.8
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 3.9e-186 655.6 646 57.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.3e-185 652.5 636 57.4
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.1e-183 646.0 635 57.0
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.6e-182 642.9 629 57.7
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.8e-182 641.7 636 57.2
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 7.6e-182 641.3 647 55.5
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 8.4e-181 637.9 636 56.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.1e-179 633.3 633 57.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-178 630.6 647 54.4
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-178 630.6 647 54.4
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.9e-178 629.0 647 54.4
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 3.9e-178 629.0 637 56.7
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 6.6e-178 628.2 647 54.1
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-178 627.9 647 54.1
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 8.6e-178 627.9 637 54.8
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-177 627.5 647 53.9
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.1e-177 627.5 639 56.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-177 626.7 647 54.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.3e-177 625.5 638 55.6
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 4.3e-177 625.5 623 56.5
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.2e-175 618.6 647 53.6
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.2e-174 617.5 600 58.0
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.7e-173 613.6 628 55.3
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.7e-173 613.6 635 55.4
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.9e-173 612.1 649 55.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.4e-172 609.8 628 54.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.3e-170 604.0 659 53.1
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 5.1e-170 602.1 637 53.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 6.6e-170 601.7 635 59.4
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.5e-169 600.5 651 53.9
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.5e-169 600.5 657 52.7
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 5.6e-169 598.6 631 53.6
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 5.6e-169 598.6 634 53.5
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 9.9e-166 587.8 654 52.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 9.9e-166 587.8 654 53.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.5e-161 573.2 651 53.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 7.4e-161 571.6 624 57.9
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 7.4e-161 571.6 630 51.3
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.6e-160 570.5 633 51.7
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 3.7e-160 569.3 632 51.1
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 6.2e-160 568.5 638 51.3
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 4.0e-159 565.8 655 51.5
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 5.3e-159 565.5 623 52.6
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.5e-158 563.9 637 51.5
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-158 563.5 625 57.9
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 7.6e-158 561.6 625 57.9
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-157 560.8 624 57.5
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.5e-156 555.4 633 51.7
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 4.6e-155 552.4 646 49.5
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.3e-154 550.1 642 50.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 5.1e-154 548.9 653 49.0
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 8.7e-154 548.1 645 49.3
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.6e-152 543.9 642 49.4
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.4e-151 540.8 644 51.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 3.1e-151 539.7 632 50.2
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-150 537.0 616 55.8
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 4.5e-150 535.8 634 54.7
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.2e-148 529.6 556 54.9
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.3e-146 523.5 651 48.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 3.9e-146 522.7 649 47.6
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.5e-145 520.0 632 53.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 5.7e-145 518.8 639 48.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 7.4e-145 518.5 625 46.2
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 5.9e-142 508.8 630 46.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.0e-141 508.1 646 48.5
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.3e-141 507.7 568 50.5
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 3.8e-141 506.1 646 46.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 6.5e-141 505.4 625 47.8
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.2e-139 501.1 650 47.1
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.6e-139 500.7 601 49.3
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 5.7e-137 492.3 588 50.2
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.9e-132 477.2 657 44.9
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.9e-132 477.2 623 46.1
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 6.1e-131 472.2 655 45.5
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.3e-128 464.5 670 41.8
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.4e-127 461.1 618 45.5
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.0e-126 457.2 664 42.0
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.5e-126 456.1 470 56.8
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.9e-126 455.7 469 56.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.4e-122 444.5 664 41.7
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 4.4e-121 439.5 602 51.8
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 5.9e-118 429.1 494 49.4
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 8.5e-117 425.2 430 57.2
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.9e-116 424.1 427 56.7
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.5e-116 423.7 613 42.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 7.2e-116 422.2 613 42.4
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 8.5e-109 398.7 634 42.3
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 2.3e-101 374.0 410 52.7
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 2.1e-99 367.5 540 48.1
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.5e-92 344.7 398 50.3
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-91 341.7 345 58.0
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 4.0e-90 336.7 336 55.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.4e-81 307.0 403 45.2
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 4.9e-80 303.1 611 36.3
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.1e-76 292.0 642 33.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 4.7e-75 286.6 615 35.3
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 8.9e-74 282.3 197 82.7
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-68 265.0 611 34.0
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.5e-68 262.3 609 34.2
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-63 248.1 610 32.1
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-58 230.7 158 81.6
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-52 211.8 563 31.3
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-51 206.5 153 71.2
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 2.9e-48 197.6 136 77.9
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 4.3e-44 183.7 367 39.5
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-43 182.2 227 53.7
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.3e-43 182.2 664 26.7
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.8e-43 180.3 240 46.7
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-42 179.1 227 53.3
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.1e-42 179.1 227 53.3
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-42 178.3 106 91.5
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.9e-39 168.3 315 39.7
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.0e-37 161.0 171 53.2
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 8.7e-37 159.5 90 94.4
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-35 153.3 90 92.2
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 3.4e-33 147.5 109 79.8
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.4e-31 142.1 124 62.9
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.6e-30 138.7 113 63.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 6.0e-30 136.7 114 61.4
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.5e-28 132.1 115 63.5
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 6.1e-22 110.2 173 38.7
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 5.1e-21 107.1 93 60.2
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 4.3e-20 104.0 121 52.9
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-19 102.4 93 58.1
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.3e-19 102.4 90 61.1
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.3e-19 102.4 105 54.3
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 4.8e-19 100.5 477 24.7
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 4.1e-18 97.4 61 82.0
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 3.4e-17 94.4 71 66.2
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 4.5e-17 94.0 98 52.0
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.1e-15 89.4 179 36.3
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.2e-14 85.9 71 57.7
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-14 85.5 71 67.6
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 5.1e-13 80.5 82 59.8
BolC5t33660H Brassica oleracea HOM05D001997 ORTHO05D004620 5.1e-13 80.5 402 30.6
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 1.3e-11 75.9 48 77.1
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.8e-11 74.7 85 48.2
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 2.2e-08 65.1 86 46.5
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.1e-07 62.8 51 64.7
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-06 59.3 60 46.7


User provided reference genes

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