Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 1.5e-113 412.9 210 100.0
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 8.6e-90 334.0 211 78.7
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 4.3e-89 331.6 210 78.1
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 5.6e-89 331.3 210 77.6
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 2.0e-86 322.8 209 77.0
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 5.8e-86 321.2 209 77.0
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 5.8e-86 321.2 209 77.0
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 3.7e-85 318.5 207 78.7
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 3.9e-82 308.5 198 77.8
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 2.1e-80 302.8 205 76.6
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 3.6e-80 302.0 210 71.9
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 1.4e-79 300.1 206 73.3
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 3.4e-78 295.4 207 73.4
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 1.9e-68 263.1 203 67.5
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 1.5e-54 216.9 203 56.2
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 5.8e-54 214.9 203 52.7
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 2.9e-53 212.6 200 55.5
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 6.4e-53 211.5 201 54.7
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 8.4e-53 211.1 211 53.6
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 1.1e-52 210.7 200 55.0
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 1.1e-52 210.7 201 54.7
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 1.4e-52 210.3 204 52.0
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 1.9e-52 209.9 200 54.5
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 1.9e-52 209.9 200 54.5
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 3.2e-52 209.1 202 52.5
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 4.2e-52 208.8 200 53.5
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 9.3e-52 207.6 203 52.7
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 1.6e-51 206.8 204 53.4
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 2.1e-51 206.5 204 51.5
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 3.5e-51 205.7 201 53.7
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 1.7e-50 203.4 200 52.0
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 1.7e-50 203.4 203 51.2
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 1.7e-50 203.4 201 54.7
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 2.3e-50 203.0 198 53.0
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 5.1e-50 201.8 192 56.8
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 8.7e-50 201.1 194 53.1
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 5.6e-49 198.4 192 56.2
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 3.6e-48 195.7 202 49.5
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 3.6e-48 195.7 192 55.7
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 3.6e-48 195.7 196 51.0
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 4.8e-48 195.3 201 49.8
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 6.2e-48 194.9 203 49.3
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 2.4e-47 193.0 203 47.8
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 3.1e-47 192.6 196 52.6
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 9.0e-47 191.0 201 47.8
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 9.0e-47 191.0 197 50.8
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 1.2e-46 190.7 204 49.0
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 1.2e-46 190.7 203 47.8
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 1.5e-46 190.3 204 50.0
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 2.6e-46 189.5 186 54.3
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 3.4e-46 189.1 188 53.2
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 4.5e-46 188.7 188 54.3
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 7.6e-46 188.0 202 48.5
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 1.3e-45 187.2 197 47.2
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 2.2e-45 186.4 196 51.5
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 4.9e-45 185.3 184 50.5
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 8.4e-45 184.5 187 49.7
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 1.1e-44 184.1 184 50.0
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 1.1e-44 184.1 201 47.8
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 1.1e-44 184.1 207 48.3
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 2.4e-44 183.0 184 50.0
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 3.2e-44 182.6 189 51.9
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 7.1e-44 181.4 202 46.5
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 7.1e-44 181.4 201 47.8
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 9.3e-44 181.0 233 47.6
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 1.2e-43 180.6 204 45.1
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 1.2e-43 180.6 210 47.6
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 1.6e-43 180.3 163 56.4
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 2.7e-43 179.5 207 45.9
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 3.5e-43 179.1 196 50.0
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 7.9e-43 177.9 196 49.0
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 1.3e-42 177.2 183 50.3
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 5.1e-42 175.3 206 49.5
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 6.7e-42 174.9 205 49.3
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 1.3e-40 170.6 163 54.0
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 2.1e-40 169.9 214 45.8
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 2.1e-40 169.9 204 46.1
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 2.8e-40 169.5 206 45.6
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 2.4e-39 166.4 201 43.3
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 5.3e-39 165.2 205 44.4
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 2.6e-38 162.9 208 43.8
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 5.8e-38 161.8 205 44.9
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 2.2e-37 159.8 201 44.3
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 3.8e-37 159.1 191 43.5
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 1.3e-34 150.6 203 42.9
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 4.3e-33 145.6 141 53.9
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 5.7e-33 145.2 137 53.3
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 2.1e-32 143.3 206 40.3
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 2.6e-30 136.3 182 41.8
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 5.8e-30 135.2 151 49.7
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 7.6e-30 134.8 272 33.5
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 1.4e-28 130.6 141 51.1
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 4.6e-27 125.6 145 46.9
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 5.1e-26 122.1 204 36.8
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 8.7e-26 121.3 114 57.0
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 4.3e-25 119.0 191 36.1
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 4.8e-24 115.5 112 53.6
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 1.1e-23 114.4 99 59.6
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 1.1e-23 114.4 210 34.8
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 1.1e-23 114.4 179 39.1
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 2.0e-22 110.2 106 52.8
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 2.0e-22 110.2 196 33.2
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 1.5e-17 94.0 133 39.8
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 6.3e-16 88.6 194 32.5
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.2e-12 76.3 117 39.3
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.2e-12 76.3 117 39.3
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.2e-12 76.3 117 39.3
Carub.0002s2683 Capsella rubella HOM05D001009 ORTHO05D000829 1.6e-11 73.9 189 26.5
AT1G80720 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 2.7e-11 73.2 189 29.1
Thhalv10008623m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 1.4e-10 70.9 191 26.2
Thhalv10019068m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 2.3e-10 70.1 189 25.4
arahy.Tifrunner.gnm1.ann1.E59ZMA Arachis hypogaea HOM05D001009 ORTHO05D000829 3.0e-10 69.7 206 24.3
Sp5g35030 Schrenkiella parvula HOM05D001009 ORTHO05D000829 3.0e-10 69.7 189 26.5
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 3.9e-10 69.3 163 25.8
AL1G28030 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 6.7e-10 68.6 185 24.9
AT1G15870 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 1.1e-09 67.8 186 24.7
MSTRG.11173 Avicennia marina HOM05D001009 ORTHO05D000829 1.1e-09 67.8 192 26.0
arahy.Tifrunner.gnm1.ann1.6U61K3 Arachis hypogaea HOM05D001009 ORTHO05D000829 3.3e-09 66.2 206 23.3
EL10Ac9g22225 Beta vulgaris HOM05D001009 ORTHO05D000829 3.3e-09 66.2 195 22.6
A07p44970 Brassica napus HOM05D001009 ORTHO05D000829 4.4e-09 65.9 189 27.0
unitig_0.g1108 Utricularia gibba HOM05D001009 ORTHO05D000829 7.4e-09 65.1 190 24.7
HPP92_007460 Vanilla planifolia HOM05D001009 ORTHO05D000829 9.7e-09 64.7 204 28.9
C05p14100 Brassica napus HOM05D001009 ORTHO05D000829 1.3e-08 64.3 191 24.1
Hund06528 Selenicereus undatus HOM05D001009 ORTHO05D000829 1.3e-08 64.3 194 23.2
BcaC08g47550 Brassica carinata HOM05D001009 ORTHO05D000829 1.7e-08 63.9 189 25.4
C06p53750 Brassica napus HOM05D001009 ORTHO05D000829 1.7e-08 63.9 189 25.4
BolC5t30141H Brassica oleracea HOM05D001009 ORTHO05D000829 1.7e-08 63.9 191 24.6
BolC6t40393H Brassica oleracea HOM05D001009 ORTHO05D000829 1.7e-08 63.9 189 25.4
Carub.0001s1567 Capsella rubella HOM05D001009 ORTHO05D000829 1.7e-08 63.9 186 24.2
CARHR016390 Cardamine hirsuta HOM05D001009 ORTHO05D000829 2.8e-08 63.2 186 23.7
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 3.7e-08 62.8 196 29.6
ClCG10G021440 Citrullus lanatus HOM05D001009 ORTHO05D000829 4.8e-08 62.4 192 25.5
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 8.2e-08 61.6 83 41.0
Glyma.14G065700 Glycine max HOM05D001009 ORTHO05D000829 1.4e-07 60.8 200 29.0
BraA07t32002Z Brassica rapa HOM05D001009 ORTHO05D000829 1.8e-07 60.5 189 24.9
PGR031G1509 Punica granatum HOM05D001009 ORTHO05D000829 1.8e-07 60.5 192 25.0
A06p11920 Brassica napus HOM05D001009 ORTHO05D000829 2.4e-07 60.1 187 24.1
BraA06t24362Z Brassica rapa HOM05D001009 ORTHO05D000829 2.4e-07 60.1 186 23.7
CARHR073770 Cardamine hirsuta HOM05D001009 ORTHO05D000829 4.1e-07 59.3 161 26.7
Eucgr.E02483 Eucalyptus grandis HOM05D001009 ORTHO05D000829 4.1e-07 59.3 193 24.9
Sc06g0007180 Simmondsia chinensis HOM05D001009 ORTHO05D000829 4.1e-07 59.3 213 22.5
Mapoly0001s0479 Marchantia polymorpha HOM05D001009 ORTHO05D000829 7.0e-07 58.5 200 25.5
Thecc.06G039000 Theobroma cacao HOM05D001009 ORTHO05D000829 7.0e-07 58.5 206 24.3
Medtr7g063520 Medicago truncatula HOM05D001009 ORTHO05D000829 1.2e-06 57.8 200 24.5
Nitab4.5_0003098g0060 Nicotiana tabacum HOM05D001009 ORTHO05D000829 1.2e-06 57.8 198 26.3
PSO675G0087 Papaver somniferum HOM05D001009 ORTHO05D000829 1.2e-06 57.8 200 23.5
Carub.0005s2235 Capsella rubella HOM05D001009 ORTHO05D000829 1.5e-06 57.4 209 24.9
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 1.5e-06 57.4 207 22.2
Lalb_Chr17g0346401 Lupinus albus HOM05D001009 ORTHO05D000829 1.5e-06 57.4 199 26.1
PSO017G3868 Papaver somniferum HOM05D001009 ORTHO05D000829 1.5e-06 57.4 196 25.0
MD12G1150500 Malus domestica HOM05D001009 ORTHO05D000829 2.0e-06 57.0 151 27.2
GSVIVG01017565001 Vitis vinifera HOM05D001009 ORTHO05D000829 2.0e-06 57.0 195 23.6
Haze_21443 Corylus avellana HOM05D001009 ORTHO05D000829 2.6e-06 56.6 190 23.7
Eucgr.E02491 Eucalyptus grandis HOM05D001009 ORTHO05D000829 2.6e-06 56.6 197 23.9
LjContig00141g0011947 Lotus japonicus HOM05D001009 ORTHO05D000829 2.6e-06 56.6 201 24.9
Sc11g0007650 Simmondsia chinensis HOM05D001009 ORTHO05D000829 2.6e-06 56.6 197 28.4
DCAR_025580 Daucus carota HOM05D001009 ORTHO05D000829 4.5e-06 55.8 185 23.8
Lj5g0010916 Lotus japonicus HOM05D001009 ORTHO05D000829 4.5e-06 55.8 189 23.3
A04p04370 Brassica napus HOM05D001009 ORTHO05D000829 5.9e-06 55.5 205 22.9
AL2G40710 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 7.7e-06 55.1 104 32.7
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 7.7e-06 55.1 165 26.7


User provided reference genes

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