Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.0e-242 842.0 431 100.0
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 4.6e-231 804.3 432 94.9
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.6e-228 794.7 432 94.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.1e-227 793.1 431 93.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 2.0e-226 788.9 431 93.5
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 4.5e-226 787.7 433 93.3
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 3.4e-218 761.5 431 91.0
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 7.6e-218 760.4 431 91.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 7.6e-218 760.4 431 91.0
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.9e-217 758.4 431 90.7
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 9.3e-216 753.4 431 90.0
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 3.5e-215 751.5 429 88.6
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.9e-214 748.0 431 88.9
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.9e-214 748.0 431 88.4
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 3.9e-214 748.0 431 88.4
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 3.7e-212 741.5 431 87.7
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 1.1e-211 740.0 431 87.5
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.1e-211 740.0 431 87.5
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 1.1e-211 740.0 431 87.5
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.2e-210 736.5 431 87.2
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.6e-210 735.3 431 87.5
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 5.8e-210 734.2 431 86.8
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 5.8e-210 734.2 431 86.8
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 5.8e-210 734.2 431 86.8
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.9e-209 731.9 431 86.8
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.9e-208 729.2 431 86.5
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 1.1e-205 719.9 431 84.9
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.5e-205 719.5 434 86.2
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.0e-201 706.8 479 78.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 5.0e-193 677.9 431 81.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.7e-186 654.1 431 75.6
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.2e-185 652.5 431 75.6
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 3.6e-183 645.2 432 75.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.1e-183 644.4 389 81.5
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 8.0e-183 644.0 431 75.2
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.4e-182 643.3 431 74.2
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.8e-182 642.9 431 74.9
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.8e-182 642.9 431 75.2
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 1.8e-182 642.9 431 75.4
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 3.0e-182 642.1 432 75.0
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 3.0e-182 642.1 431 75.6
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.1e-181 640.2 428 75.5
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.1e-181 640.2 431 75.2
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 2.0e-181 639.4 432 74.1
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 3.3e-181 638.6 431 74.2
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 4.4e-181 638.3 432 75.0
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.7e-181 637.9 431 74.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.7e-180 636.3 431 74.9
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 2.8e-180 635.6 431 74.9
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 3.7e-180 635.2 414 76.8
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 6.3e-180 634.4 432 75.0
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 6.3e-180 634.4 434 74.2
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.8e-179 632.9 414 76.8
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.8e-179 632.9 431 73.8
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 4.1e-179 631.7 432 74.5
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 5.3e-179 631.3 431 74.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 7.0e-179 630.9 431 73.5
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 7.0e-179 630.9 431 73.5
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 2.6e-178 629.0 428 73.6
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 2.6e-178 629.0 389 79.9
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 3.5e-178 628.6 431 75.2
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.0e-177 627.1 431 73.5
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 1.3e-177 626.7 389 78.7
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.7e-177 626.3 431 73.5
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 2.9e-177 625.5 431 72.9
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.9e-177 625.5 431 72.9
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 3.8e-177 625.2 434 73.5
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 5.0e-177 624.8 431 74.0
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 6.5e-177 624.4 432 72.7
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.1e-176 623.6 436 73.6
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.1e-176 623.6 431 72.9
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.1e-176 623.6 431 72.6
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.1e-176 623.6 431 72.6
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.1e-176 623.6 431 72.6
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 7.2e-176 620.9 384 79.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 9.4e-176 620.5 434 74.2
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.2e-175 620.2 392 78.6
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.2e-175 620.2 431 73.3
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.6e-175 619.8 400 76.8
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.6e-175 619.8 431 72.9
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.1e-175 619.4 389 79.4
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 1.8e-174 616.3 435 73.8
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 2.3e-174 615.9 392 76.5
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 4.0e-174 615.1 401 76.6
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 5.2e-174 614.8 432 73.1
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 5.2e-174 614.8 397 76.8
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 8.8e-174 614.0 434 72.8
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.5e-173 613.2 431 72.4
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.6e-173 612.5 389 77.6
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 9.7e-173 610.5 385 77.1
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 9.7e-173 610.5 385 77.1
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.3e-172 610.1 406 74.6
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.7e-172 609.8 431 71.7
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 2.8e-172 609.0 432 72.0
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 8.3e-172 607.4 392 75.5
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.8e-171 606.3 393 76.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.4e-171 605.9 431 71.2
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 3.1e-171 605.5 411 74.2
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 3.1e-171 605.5 431 71.7
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 4.1e-171 605.1 393 76.1
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 3.5e-170 602.1 431 70.8
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.3e-169 600.1 411 73.7
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.7e-169 599.7 435 71.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 2.2e-169 599.4 431 71.0
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 6.5e-169 597.8 377 78.8
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.1e-168 597.0 322 92.5
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.1e-168 597.0 404 74.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.4e-168 594.0 438 70.5
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.6e-167 593.2 371 79.5
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.1e-167 592.8 415 72.3
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 2.7e-167 592.4 411 74.7
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 4.7e-167 591.7 434 71.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 1.8e-166 589.7 431 69.6
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 4.0e-166 588.6 417 72.4
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 8.8e-166 587.4 393 74.8
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-165 585.9 413 71.7
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 5.7e-165 584.7 415 72.8
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 2.8e-164 582.4 354 80.8
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.8e-163 579.7 379 74.9
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 5.4e-163 578.2 435 70.3
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 9.1e-163 577.4 367 78.5
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.3e-161 572.8 432 66.7
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.8e-161 572.0 336 87.5
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.6e-159 566.6 411 69.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 6.1e-159 564.7 335 81.8
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 5.2e-158 561.6 389 73.3
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.2e-157 560.5 417 70.5
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 2.0e-157 559.7 389 72.2
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.6e-157 559.3 379 74.7
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 7.5e-157 557.8 436 66.7
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.1e-155 552.4 443 65.2
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 3.1e-155 552.4 431 65.4
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.3e-153 547.0 389 70.4
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.9e-153 545.8 370 71.4
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 9.8e-149 530.8 460 63.0
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 7.8e-146 521.2 315 82.2
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 5.0e-145 518.5 387 66.4
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.1e-143 513.1 463 62.6
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.7e-140 503.4 363 71.3
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.7e-140 503.4 420 64.8
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.7e-138 496.1 437 60.2
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 6.6e-137 491.5 416 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.7e-132 475.7 405 60.2
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 4.9e-132 475.3 371 67.9
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 1.2e-130 470.7 434 56.5
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 2.6e-125 453.0 389 60.2
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 1.2e-122 444.1 404 61.9
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.1e-120 437.6 366 65.3
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.7e-116 423.7 231 91.3
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.3e-113 414.1 241 83.8
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.1e-111 406.8 335 65.1
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.7e-108 397.1 271 73.1
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.8e-97 360.5 390 50.5
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.1e-97 359.0 211 83.9
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 8.7e-97 358.2 410 48.0
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 6.1e-90 335.5 390 49.0
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 2.2e-84 317.0 273 59.0
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 4.1e-78 296.2 196 73.5
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 2.1e-74 283.9 342 52.9
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 8.5e-68 261.9 151 84.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 1.1e-64 251.5 302 46.4
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.1e-62 245.0 397 38.8
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.6e-61 240.4 222 59.0
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.1e-54 218.4 214 54.7
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.7e-52 211.1 304 40.5
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 3.4e-48 196.8 120 79.2
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.4e-46 191.4 182 56.6
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.5e-43 180.6 432 33.8
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.0e-33 148.7 127 66.1
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 3.4e-32 143.7 142 54.9
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 2.4e-30 137.5 132 60.6
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.6e-26 124.8 72 84.7
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.1e-26 122.5 75 80.0
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.4e-22 111.7 85 62.4
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 1.9e-22 111.3 91 71.4
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 6.0e-21 106.3 75 66.7
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 2.1e-18 97.8 74 68.9
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.8e-18 97.4 61 72.1
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.9e-14 84.7 54 72.2
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 2.1e-13 81.3 60 65.0
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.5e-11 75.1 123 39.8
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 3.1e-09 67.4 138 37.0
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 8.9e-09 65.9 55 65.5
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 9.9e-08 62.4 35 82.9


User provided reference genes

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