Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g23500 Schrenkiella parvula HOM05D007488 ORTHO05D009461 3.2e-84 315.1 162 100.0
Thhalv10017345m.g Eutrema salsugineum HOM05D007488 ORTHO05D009461 6.9e-79 297.4 162 94.4
BcaB01g03485 Brassica carinata HOM05D007488 ORTHO05D009461 9.9e-78 293.5 162 92.0
A03p23120 Brassica napus HOM05D007488 ORTHO05D009461 2.2e-77 292.4 162 92.0
BraA03t11533Z Brassica rapa HOM05D007488 ORTHO05D009461 2.2e-77 292.4 162 92.0
AL4G39170 Arabidopsis lyrata HOM05D007488 ORTHO05D009461 2.9e-77 292.0 162 92.0
AT2G41200 Arabidopsis thaliana HOM05D007488 ORTHO05D009461 3.2e-76 288.5 162 90.1
BcaC01g05355 Brassica carinata HOM05D007488 ORTHO05D009461 4.2e-76 288.1 162 90.7
C03p27550 Brassica napus HOM05D007488 ORTHO05D009461 4.2e-76 288.1 162 90.7
BolC3t15128H Brassica oleracea HOM05D007488 ORTHO05D009461 4.2e-76 288.1 162 90.7
CARHR136300 Cardamine hirsuta HOM05D007488 ORTHO05D009461 5.4e-76 287.7 162 90.7
Carub.0004s2351 Capsella rubella HOM05D007488 ORTHO05D009461 9.6e-65 250.4 141 89.4
BcaC02g12760 Brassica carinata HOM05D007488 ORTHO05D009461 1.1e-57 226.9 161 77.6
THA.LOC104803261 Tarenaya hassleriana HOM05D007488 ORTHO05D009461 3.3e-57 225.3 165 72.1
Cpa.g.sc5.171 Carica papaya HOM05D007488 ORTHO05D009461 2.5e-41 172.6 165 57.0
PGR142G4416 Punica granatum HOM05D007488 ORTHO05D009461 1.5e-38 163.3 163 50.3
Manes.09G005400 Manihot esculenta HOM05D007488 ORTHO05D009461 1.0e-37 160.6 163 52.1
Cc06_g19180 Coffea canephora HOM05D007488 ORTHO05D009461 6.5e-37 157.9 162 51.9
TWI74G0203 Tripterygium wilfordii HOM05D007488 ORTHO05D009461 3.2e-36 155.6 146 52.1
Lsat_1_v5_gn_5_157940 Lactuca sativa HOM05D007488 ORTHO05D009461 4.2e-36 155.2 151 51.0
Ciclev10006109m.g Citrus clementina HOM05D007488 ORTHO05D009461 1.2e-35 153.7 163 49.1
DCAR_016880 Daucus carota HOM05D007488 ORTHO05D009461 6.1e-35 151.4 164 51.2
Eucgr.A02247 Eucalyptus grandis HOM05D007488 ORTHO05D009461 3.0e-34 149.1 165 46.1
Haze_15889 Corylus avellana HOM05D007488 ORTHO05D009461 3.9e-34 148.7 163 49.7
Migut.K00133 Erythranthe guttata HOM05D007488 ORTHO05D009461 5.1e-34 148.3 162 48.8
HanXRQChr03g0061531 Helianthus annuus HOM05D007488 ORTHO05D009461 5.1e-34 148.3 162 47.5
Rhsim03G0039700 Rhododendron simsii HOM05D007488 ORTHO05D009461 6.7e-34 147.9 163 47.9
MD14G1087900 Malus domestica HOM05D007488 ORTHO05D009461 1.5e-33 146.7 163 49.1
Actinidia01825 Actinidia chinensis HOM05D007488 ORTHO05D009461 2.0e-33 146.4 163 48.5
Aa31LG3G800 Aethionema arabicum HOM05D007488 ORTHO05D009461 3.3e-33 145.6 85 85.9
MSTRG.19810 Avicennia marina HOM05D007488 ORTHO05D009461 4.4e-33 145.2 162 47.5
Prupe.7G038600 Prunus persica HOM05D007488 ORTHO05D009461 4.4e-33 145.2 186 43.5
SalBow1G5076 Salvia bowleyana HOM05D007488 ORTHO05D009461 5.7e-33 144.8 162 48.1
SalBow1G6194 Salvia bowleyana HOM05D007488 ORTHO05D009461 5.7e-33 144.8 162 48.1
C04p02520 Brassica napus HOM05D007488 ORTHO05D009461 7.4e-33 144.4 96 81.2
ECA248G2641 Erigeron canadensis HOM05D007488 ORTHO05D009461 7.4e-33 144.4 151 49.0
Sc18g0003830 Simmondsia chinensis HOM05D007488 ORTHO05D009461 9.7e-33 144.1 145 49.0
Nn4g25823 Nelumbo nucifera HOM05D007488 ORTHO05D009461 1.3e-32 143.7 166 50.0
Cfa003623 Carpinus fangiana HOM05D007488 ORTHO05D009461 2.8e-32 142.5 163 47.2
CiPaw.09G047600 Carya illinoinensis HOM05D007488 ORTHO05D009461 2.8e-32 142.5 163 46.0
Thecc.05G135000 Theobroma cacao HOM05D007488 ORTHO05D009461 4.8e-32 141.7 151 51.7
QL07p010346 Quercus lobata HOM05D007488 ORTHO05D009461 1.1e-31 140.6 161 44.1
Duzib106G1788 Durio zibethinus HOM05D007488 ORTHO05D009461 1.4e-31 140.2 162 50.0
BolC4t21895H Brassica oleracea HOM05D007488 ORTHO05D009461 2.4e-31 139.4 85 85.9
Atru.chr1.1442 Acer truncatum HOM05D007488 ORTHO05D009461 9.1e-31 137.5 165 46.1
Dinv09710 Davidia involucrata HOM05D007488 ORTHO05D009461 1.2e-30 137.1 163 46.6
Psat3g078680 Pisum sativum HOM05D007488 ORTHO05D009461 1.6e-30 136.7 163 46.0
Medtr7g089940 Medicago truncatula HOM05D007488 ORTHO05D009461 2.6e-30 136.0 163 46.0
CANSAT64G0776 Cannabis sativa HOM05D007488 ORTHO05D009461 4.5e-30 135.2 167 44.9
AUR62030320 Chenopodium quinoa HOM05D007488 ORTHO05D009461 1.0e-29 134.0 165 44.2
Ca_08393_v3 Cicer arietinum L. HOM05D007488 ORTHO05D009461 1.7e-29 133.3 163 45.4
Peaxi162Scf00076g00524 Petunia axillaris HOM05D007488 ORTHO05D009461 1.7e-29 133.3 152 44.1
Potri.006G038600 Populus trichocarpa HOM05D007488 ORTHO05D009461 5.0e-29 131.7 118 56.8
EL10Ac3g07236 Beta vulgaris HOM05D007488 ORTHO05D009461 8.5e-29 131.0 163 47.2
Gohir.A11G307200 Gossypium hirsutum HOM05D007488 ORTHO05D009461 1.1e-28 130.6 152 47.4
Gohir.D11G322700 Gossypium hirsutum HOM05D007488 ORTHO05D009461 1.5e-28 130.2 152 46.7
Lalb_Chr22g0357421 Lupinus albus HOM05D007488 ORTHO05D009461 1.9e-28 129.8 164 48.8
TPR.G30624 Trifolium pratense HOM05D007488 ORTHO05D009461 3.2e-28 129.0 163 44.8
SGA_v2.0_scaffold94G28540 Striga asiatica HOM05D007488 ORTHO05D009461 4.2e-28 128.6 152 45.4
Gorai.007G352800 Gossypium raimondii HOM05D007488 ORTHO05D009461 1.2e-27 127.1 152 45.4
arahy.Tifrunner.gnm1.ann1.8RZU3Q Arachis hypogaea HOM05D007488 ORTHO05D009461 1.6e-27 126.7 169 43.8
Nitab4.5_0006279g0050 Nicotiana tabacum HOM05D007488 ORTHO05D009461 3.6e-27 125.6 139 46.0
Hund19096 Selenicereus undatus HOM05D007488 ORTHO05D009461 4.7e-27 125.2 165 42.4
Nitab4.5_0000812g0120 Nicotiana tabacum HOM05D007488 ORTHO05D009461 6.1e-27 124.8 165 42.4
CAN.G317.6 Capsicum annuum HOM05D007488 ORTHO05D009461 1.0e-26 124.0 162 42.0
AUR62018346 Chenopodium quinoa HOM05D007488 ORTHO05D009461 1.8e-26 123.2 166 43.4
Nitab4.5_0000424g0040 Nicotiana tabacum HOM05D007488 ORTHO05D009461 2.3e-26 122.9 142 43.7
Lj1g0022068 Lotus japonicus HOM05D007488 ORTHO05D009461 3.0e-26 122.5 165 43.0
Sopen03g012080 Solanum pennellii HOM05D007488 ORTHO05D009461 3.0e-26 122.5 162 41.4
PSO339G1058 Papaver somniferum HOM05D007488 ORTHO05D009461 6.7e-26 121.3 163 41.1
Nitab4.5_0001937g0020 Nicotiana tabacum HOM05D007488 ORTHO05D009461 8.8e-26 120.9 163 41.1
TAR369G0408 Trochodendron aralioides HOM05D007488 ORTHO05D009461 8.8e-26 120.9 175 42.3
arahy.Tifrunner.gnm1.ann1.Z4B7ZU Arachis hypogaea HOM05D007488 ORTHO05D009461 1.1e-25 120.6 169 42.6
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 9.7e-25 117.5 107 57.0
Phvul.001G123700 Phaseolus vulgaris HOM05D007488 ORTHO05D009461 8.2e-24 114.4 168 40.5
VMungo1383G0792 Vigna mungo HOM05D007488 ORTHO05D009461 8.2e-24 114.4 166 41.6
Glyma.19G130600 Glycine max HOM05D007488 ORTHO05D009461 1.1e-23 114.0 166 39.8
Aqoxy2G00394 Aquilegia oxysepala HOM05D007488 ORTHO05D009461 5.3e-23 111.7 192 38.0
A05p02110 Brassica napus HOM05D007488 ORTHO05D009461 7.0e-23 111.3 94 69.1
BraA05t19207Z Brassica rapa HOM05D007488 ORTHO05D009461 7.0e-23 111.3 94 69.1
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 9.1e-23 110.9 115 46.1
RcHm_v2.0_Chr2g0164041 Rosa chinensis HOM05D007488 ORTHO05D009461 1.2e-22 110.5 161 42.2
FAN05G4359 Fragaria x ananassa HOM05D007488 ORTHO05D009461 2.7e-22 109.4 190 39.5
Glyma.03G128000 Glycine max HOM05D007488 ORTHO05D009461 7.7e-22 107.8 135 43.7
FvH4_6g45840 Fragaria vesca HOM05D007488 ORTHO05D009461 1.3e-21 107.1 177 37.9
FAN02G3897 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.1e-20 104.0 178 38.8
Sopen10g029120 Solanum pennellii HOM05D000484 ORTHO05D000346 1.9e-20 103.2 132 43.2
Lj1P1093T64 Lonicera japonica HOM05D007488 ORTHO05D009461 2.1e-19 99.8 85 52.9
GSVIVG01033626001 Vitis vinifera HOM05D007488 ORTHO05D009461 2.8e-16 89.4 119 38.7
CDE09G0800 Ceratophyllum demersum HOM05D007488 ORTHO05D009461 4.1e-15 85.5 165 33.3
FAN14G1565 Fragaria x ananassa HOM05D007488 ORTHO05D009461 4.1e-15 85.5 79 54.4
Peaxi162Scf00701g00057 Petunia axillaris HOM05D007488 ORTHO05D009461 1.6e-14 83.6 80 50.0
PSO384G4473 Papaver somniferum HOM05D007488 ORTHO05D009461 7.7e-14 81.3 116 39.7
MBI18_g37945_MAGBIO Magnolia biondii HOM05D007488 ORTHO05D009461 1.4e-10 70.5 132 35.6
FAN09G2471 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.2e-09 67.4 146 32.9
Solyc03g058440.1 Solanum lycopersicum HOM05D007488 ORTHO05D009461 7.5e-09 64.7 67 50.7


User provided reference genes

Program Settings