Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 6.4e-129 464.2 245 100.0
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 3.6e-87 325.5 247 74.5
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.3e-85 318.9 246 72.0
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 6.3e-84 314.7 248 73.8
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.6e-82 309.3 250 74.0
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.4e-82 308.9 250 74.0
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.4e-82 308.9 250 74.0
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.7e-81 306.6 247 72.9
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 6.5e-81 304.7 250 74.0
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 8.5e-81 304.3 248 72.2
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 4.4e-69 265.4 248 66.1
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.5e-56 223.8 259 58.3
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 5.5e-56 221.9 250 58.0
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 5.5e-56 221.9 250 58.0
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 2.8e-55 219.5 252 57.1
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 3.6e-55 219.2 264 55.7
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 1.4e-54 217.2 252 56.7
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 3.0e-54 216.1 251 57.4
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 3.0e-54 216.1 251 57.4
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 3.0e-54 216.1 251 57.4
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 5.2e-54 215.3 256 57.0
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.2e-54 215.3 258 54.7
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 2.0e-53 213.4 248 55.2
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 4.9e-52 208.8 257 54.5
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 4.9e-52 208.8 257 54.5
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 4.9e-52 208.8 257 54.5
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.1e-51 207.6 264 54.2
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.1e-51 206.1 252 53.6
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-50 204.1 250 54.0
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 3.5e-50 202.6 256 52.7
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.3e-48 195.7 264 51.9
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 6.4e-44 181.8 259 50.6
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.5e-42 176.0 255 50.2
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.4e-35 154.1 250 45.6
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.4e-35 154.1 257 42.8
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.9e-35 153.7 250 44.8
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 3.2e-35 152.9 250 44.4
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 3.9e-33 146.0 266 39.8
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 6.6e-33 145.2 253 42.7
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.1e-32 144.4 255 44.7
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 1.2e-31 141.0 266 41.0
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 1.6e-31 140.6 248 41.5
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.6e-31 140.6 258 41.9
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 2.8e-31 139.8 253 42.3
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.8e-30 137.1 246 40.2
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 2.3e-30 136.7 246 41.5
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.1e-30 136.3 274 40.5
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 3.1e-30 136.3 259 42.1
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 5.2e-30 135.6 246 41.5
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 8.9e-30 134.8 250 44.0
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 8.9e-30 134.8 273 39.6
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.5e-29 134.0 258 39.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 2.0e-29 133.7 256 41.0
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 5.8e-29 132.1 246 42.7
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 2.2e-28 130.2 244 43.0
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 2.2e-28 130.2 272 39.7
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 3.7e-28 129.4 247 40.5
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 8.3e-28 128.3 262 40.1
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.1e-27 127.9 260 40.8
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.4e-27 127.5 263 38.0
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 3.2e-27 126.3 252 40.5
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 4.1e-27 125.9 240 40.4
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 5.4e-27 125.6 246 38.2
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.6e-26 124.0 254 40.9
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.7e-26 123.2 259 39.8
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.7e-26 123.2 254 39.4
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 3.5e-26 122.9 263 37.3
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 4.6e-26 122.5 261 39.8
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 4.6e-26 122.5 252 37.7
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 7.8e-26 121.7 268 38.8
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 7.8e-26 121.7 265 37.0
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.0e-25 121.3 267 38.6
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.9e-25 119.4 243 37.9
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 8.6e-25 118.2 212 41.5
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.1e-24 117.9 252 39.3
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.5e-24 116.7 243 37.9
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 2.5e-24 116.7 255 36.5
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.5e-24 116.7 231 42.0
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 5.6e-24 115.5 254 37.0
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.2e-23 114.4 263 35.7
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.1e-23 113.6 244 36.5
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.1e-22 111.3 248 39.1
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.1e-22 109.8 244 36.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.2e-22 109.0 244 36.9
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.5e-21 107.5 193 40.9
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.5e-21 107.5 245 38.0
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 5.8e-21 105.5 286 33.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 7.6e-21 105.1 248 37.1
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.7e-20 104.0 191 41.9
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 2.9e-20 103.2 256 35.2
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 2.9e-20 103.2 242 34.7
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.8e-20 102.8 244 34.4
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 4.9e-20 102.4 260 35.8
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 4.9e-20 102.4 149 47.7
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 8.4e-20 101.7 253 35.2
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.4e-19 100.9 244 34.4
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 1.4e-19 100.9 255 36.5
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.9e-19 100.5 246 35.4
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.9e-19 100.5 250 35.2
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.9e-19 100.5 244 34.8
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.4e-19 100.1 252 33.7
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 4.1e-19 99.4 250 34.0
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 5.4e-19 99.0 246 37.0
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 5.4e-19 99.0 243 35.4
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 7.1e-19 98.6 241 34.4
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.2e-18 97.8 185 40.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-18 97.8 141 46.1
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.2e-18 97.8 141 46.1
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 2.1e-18 97.1 250 34.4
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 4.6e-18 95.9 247 34.4
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 4.6e-18 95.9 242 34.3
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 6.0e-18 95.5 242 33.9
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.8e-18 95.1 141 45.4
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 3.0e-17 93.2 248 32.3
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.5e-16 90.9 140 42.9
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 1.5e-16 90.9 188 34.6
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.5e-16 90.1 142 42.3
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 2.5e-16 90.1 259 32.4
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-16 89.7 246 32.1
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.3e-16 89.4 141 41.8
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 7.3e-16 88.6 212 33.5
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 7.3e-16 88.6 249 33.7
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 7.3e-16 88.6 185 35.1
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 9.6e-16 88.2 137 43.1
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.2e-15 87.8 242 32.2
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 6.2e-15 85.5 186 37.1
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-14 84.7 244 31.6
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.1e-14 84.7 242 33.5
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.4e-14 84.3 163 38.0
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.4e-14 84.3 243 31.3
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.8e-14 84.0 257 35.0
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.1e-14 83.2 242 31.8
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 9.0e-14 81.6 246 31.3
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 1.2e-13 81.3 197 34.0
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 2.6e-13 80.1 259 34.4
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 3.4e-13 79.7 198 39.9
BcaC02g12869 Brassica carinata HOM05D004369 ORTHO05D004907 2.9e-12 76.6 127 50.4
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 6.4e-12 75.5 240 31.7
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 8.4e-12 75.1 134 38.8
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 4.2e-11 72.8 249 29.7
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.2e-10 71.2 191 28.8
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.6e-10 70.9 145 40.0
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 6.0e-10 68.9 254 30.7
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.0e-09 68.2 188 31.9
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 2.3e-09 67.0 132 40.2
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 6.6e-09 65.5 252 31.7
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 8.7e-09 65.1 248 28.2
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 1.5e-08 64.3 98 45.9
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.9e-08 63.9 139 36.0
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 2.5e-08 63.5 139 35.3
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.6e-08 62.4 79 45.6
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 2.1e-07 60.5 158 33.5
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.8e-07 59.3 92 42.4
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 6.2e-07 58.9 59 52.5
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-06 58.2 240 29.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 2.4e-06 57.0 177 32.8


User provided reference genes

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