Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.7e-24 115.2 56 100.0
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 3.5e-22 107.5 56 89.3
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 3.5e-22 107.5 56 89.3
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 7.8e-22 106.3 56 87.5
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 7.8e-22 106.3 56 87.5
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 5.0e-21 103.6 54 90.7
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 5.0e-21 103.6 54 90.7
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 5.0e-21 103.6 54 90.7
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 9.5e-20 99.4 51 90.2
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 1.6e-19 98.6 53 86.8
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 6.1e-19 96.7 58 81.0
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 1.8e-18 95.1 54 79.6
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 6.8e-18 93.2 58 77.6
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 6.8e-18 93.2 58 77.6
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 2.0e-17 91.7 56 82.1
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 2.0e-17 91.7 56 82.1
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 2.6e-17 91.3 56 82.1
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 2.6e-17 91.3 56 82.1
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 7.5e-17 89.7 56 78.6
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 1.4e-15 85.5 46 87.0
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 2.7e-14 81.3 54 63.0
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 3.5e-14 80.9 57 77.2
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.0e-13 77.8 56 58.9
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 3.9e-13 77.4 59 62.7
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 5.0e-13 77.0 56 58.9
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 6.6e-13 76.6 54 63.0
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 8.6e-13 76.3 57 66.7
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.5e-12 75.5 56 58.9
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.9e-12 75.1 60 60.0
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 2.5e-12 74.7 54 59.3
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 2.5e-12 74.7 60 60.0
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.3e-12 74.3 53 64.2
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 5.6e-12 73.6 56 55.4
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.2e-11 72.4 53 54.7
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.2e-11 72.4 57 56.1
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.2e-11 72.4 57 56.1
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.6e-11 72.0 52 57.7
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 2.8e-11 71.2 43 74.4
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.8e-11 71.2 57 54.4
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 2.8e-11 71.2 53 58.5
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 2.8e-11 71.2 54 61.1
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 3.6e-11 70.9 52 59.6
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.6e-11 70.9 57 56.1
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.6e-11 70.9 53 60.4
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 6.2e-11 70.1 56 60.7
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 6.2e-11 70.1 60 60.0
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 6.2e-11 70.1 42 64.3
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 8.0e-11 69.7 49 65.3
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 8.0e-11 69.7 49 65.3
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.1e-10 69.3 48 60.4
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 1.1e-10 69.3 58 62.1
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 1.1e-10 69.3 58 62.1
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 1.1e-10 69.3 58 62.1
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.4e-10 68.9 58 58.6
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.4e-10 68.9 53 58.5
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.8e-10 68.6 51 56.9
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.8e-10 68.6 53 60.4
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.3e-10 68.2 59 52.5
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 5.2e-10 67.0 37 86.5
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.2e-10 67.0 53 54.7
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 6.8e-10 66.6 47 61.7
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 8.9e-10 66.2 54 53.7
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.9e-10 66.2 54 59.3
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.2e-09 65.9 50 62.0
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 50 62.0
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 61 52.5
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 1.5e-09 65.5 35 88.6
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 1.5e-09 65.5 45 60.0
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.5e-09 65.5 55 50.9
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.5e-09 65.5 53 50.9
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 2.0e-09 65.1 49 59.2
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.0e-09 65.1 53 52.8
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 5.8e-09 63.5 45 60.0
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 7.5e-09 63.2 53 52.8
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 7.5e-09 63.2 56 53.6
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 9.8e-09 62.8 54 55.6
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.7e-08 62.0 47 57.4
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 1.7e-08 62.0 56 55.4
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.2e-08 61.6 54 48.1
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 2.2e-08 61.6 56 53.6
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.2e-08 61.6 54 53.7
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 2.9e-08 61.2 45 53.3
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 2.9e-08 61.2 52 55.8
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 4.9e-08 60.5 55 47.3
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 8.3e-08 59.7 45 53.3
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.1e-07 59.3 49 53.1
BcaC01g00581 Brassica carinata HOM05D007120 ORTHO05D008881 1.4e-07 58.9 56 58.9
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 1.9e-07 58.5 53 50.9
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 4.1e-07 57.4 56 50.0
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.4e-07 57.0 67 41.8
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 1.2e-06 55.8 37 73.0
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 1.6e-06 55.5 41 61.0
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 1.6e-06 55.5 40 60.0
BolC1t02550H Brassica oleracea HOM05D015100 ORTHO05D005488 2.7e-06 54.7 37 78.4
BolC9t53790H Brassica oleracea HOM05D015100 ORTHO05D005488 2.7e-06 54.7 37 78.4
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.6e-06 53.9 67 44.8
BcaC09g50389 Brassica carinata HOM05D015100 ORTHO05D005488 7.8e-06 53.1 37 75.7
BolC9t55552H Brassica oleracea HOM05D015100 ORTHO05D005488 7.8e-06 53.1 37 75.7
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 7.8e-06 53.1 45 53.3


User provided reference genes

Program Settings