Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 0.0e+00 1090.5 530 100.0
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 1.1e-269 932.9 554 83.8
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 1.4e-269 932.6 527 86.5
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 4.4e-268 927.5 529 86.2
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 8.4e-267 923.3 529 85.6
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 1.1e-266 922.9 529 85.8
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 1.1e-266 922.9 529 85.4
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 7.1e-266 920.2 529 85.1
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 1.7e-264 915.6 529 85.4
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 2.1e-262 908.7 528 84.7
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 4.4e-260 901.0 519 85.2
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 9.0e-245 850.1 619 69.0
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 1.0e-224 783.5 376 100.0
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 1.1e-215 753.4 524 69.8
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 2.9e-211 738.8 518 68.5
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 3.0e-208 728.8 520 68.1
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 1.3e-203 713.4 524 66.8
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 1.2e-201 706.8 515 66.2
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 1.2e-201 706.8 520 65.2
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 2.1e-201 706.1 528 63.6
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 6.1e-201 704.5 515 66.2
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 8.8e-200 700.7 519 64.9
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 7.5e-199 697.6 522 64.4
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.2e-198 696.0 526 64.4
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 6.3e-198 694.5 526 64.8
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 8.2e-198 694.1 538 63.4
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 2.4e-197 692.6 513 64.5
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.0e-197 691.0 518 64.9
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 9.1e-197 690.6 527 64.5
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 4.5e-196 688.3 514 64.2
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 5.9e-196 688.0 526 64.1
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 8.5e-195 684.1 514 64.0
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.9e-194 682.9 526 63.9
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 2.7e-193 679.1 523 63.1
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 4.7e-193 678.3 514 64.2
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 1.4e-192 676.8 529 63.1
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 1.8e-192 676.4 535 63.0
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 3.0e-192 675.6 524 63.0
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 3.4e-191 672.2 523 63.3
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 5.7e-191 671.4 524 62.8
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 1.7e-190 669.8 524 62.6
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 6.3e-190 667.9 518 62.2
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 1.1e-189 667.2 525 63.4
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 1.4e-189 666.8 531 63.3
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 2.4e-189 666.0 519 63.0
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 5.4e-189 664.8 513 62.8
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 2.0e-188 662.9 511 63.0
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 1.7e-187 659.8 508 62.8
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 3.8e-187 658.7 514 62.1
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 6.5e-187 657.9 515 62.1
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 1.9e-186 656.4 512 62.3
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 7.2e-186 654.4 517 62.3
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 9.5e-186 654.1 489 65.2
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 9.5e-186 654.1 620 53.7
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 9.5e-186 654.1 514 61.9
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 1.4e-184 650.2 380 83.7
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 1.4e-184 650.2 522 61.7
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 1.3e-182 643.7 532 59.8
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 1.7e-182 643.3 505 61.4
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 2.2e-182 642.9 475 66.7
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 1.1e-181 640.6 512 60.5
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.6e-177 626.7 478 64.2
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 1.2e-175 620.5 521 60.1
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 5.7e-175 618.2 530 57.4
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 7.5e-175 617.8 515 59.6
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 7.5e-175 617.8 567 54.3
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 7.8e-172 607.8 468 62.6
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 1.7e-171 606.7 543 55.8
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 6.6e-171 604.7 480 62.9
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 1.6e-169 600.1 525 57.7
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.6e-169 600.1 538 57.4
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 3.6e-169 599.0 536 57.1
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 4.0e-168 595.5 475 62.1
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 1.3e-166 590.5 526 58.4
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 2.0e-164 583.2 459 63.4
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 4.6e-164 582.0 446 64.1
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 6.0e-164 581.6 515 58.1
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 6.6e-163 578.2 467 62.3
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 3.3e-162 575.9 608 51.8
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 4.3e-162 575.5 550 53.3
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 1.1e-160 570.9 428 64.5
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 8.3e-158 561.2 428 64.3
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 8.1e-153 544.7 418 62.9
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 5.2e-152 542.0 407 64.4
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 1.2e-151 540.8 373 68.4
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 3.8e-150 535.8 445 60.4
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 2.7e-148 529.6 557 47.6
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 5.1e-147 525.4 423 61.5
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 1.6e-145 520.4 482 54.6
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 2.4e-144 516.5 576 47.6
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 8.9e-144 514.6 406 61.3
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 5.8e-143 511.9 406 61.1
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 1.4e-141 507.3 408 60.8
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 3.0e-139 499.6 434 57.8
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 3.9e-139 499.2 381 64.0
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 1.5e-135 487.3 519 48.9
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 7.9e-132 474.9 403 58.3
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 2.3e-131 473.4 445 55.7
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 3.4e-127 459.5 372 58.6
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 6.0e-124 448.7 424 53.5
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 8.7e-123 444.9 528 46.6
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 2.9e-110 403.3 366 55.5
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 2.8e-105 386.7 387 53.0
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 1.6e-100 370.9 523 41.9
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 9.1e-96 355.1 239 68.6
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 1.9e-85 320.9 248 60.9
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 3.8e-78 296.6 517 36.4
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 2.5e-77 293.9 420 42.1
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 6.5e-70 269.2 265 53.6
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 1.1e-64 251.9 595 30.8
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 9.2e-64 248.8 239 53.1
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 5.6e-61 239.6 145 76.6
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 2.9e-57 227.3 147 70.7
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 3.7e-49 200.3 337 34.7
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 1.3e-46 191.8 151 57.6
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 3.7e-41 173.7 148 54.7
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 1.4e-40 171.8 133 58.6
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 2.7e-39 167.5 143 64.3
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 1.9e-37 161.4 109 69.7
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 2.1e-36 157.9 90 82.2
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 1.1e-35 155.6 88 80.7
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 8.4e-33 146.0 98 70.4
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 1.7e-22 111.7 68 76.5
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 1.1e-19 102.4 120 45.8
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.9e-13 81.6 46 69.6
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 8.1e-12 76.3 55 60.0


User provided reference genes

Program Settings