Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.9e-144 515.8 257 100.0
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 9.2e-94 347.4 206 85.4
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 2.2e-63 246.5 259 53.7
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 1.2e-61 240.7 269 52.4
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 1.2e-61 240.7 269 52.4
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 7.8e-61 238.0 273 51.3
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 2.5e-59 233.0 270 51.5
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 2.3e-52 209.9 264 50.0
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 1.5e-51 207.2 249 45.8
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 4.5e-48 195.7 249 45.8
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 4.5e-48 195.7 249 45.8
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.1e-46 191.0 249 44.6
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 5.5e-46 188.7 249 45.0
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 1.3e-44 184.1 249 45.4
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 3.0e-44 183.0 250 50.0
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 5.8e-40 168.7 215 47.0
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-39 167.5 267 43.4
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.7e-39 167.2 267 43.8
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.7e-39 167.2 267 43.8
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 6.5e-39 165.2 214 45.8
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 6.5e-39 165.2 214 45.8
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 8.4e-39 164.9 206 47.1
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.5e-38 162.2 222 46.8
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 7.1e-38 161.8 214 45.3
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.7e-37 159.8 200 48.0
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.6e-37 159.1 199 45.2
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.2e-34 148.3 185 47.0
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.2e-34 148.3 168 48.2
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-32 142.9 186 45.2
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-32 142.9 185 44.9
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 3.4e-32 142.9 220 41.8
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.5e-32 142.5 173 46.2
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 5.9e-32 142.1 174 46.0
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-31 141.4 189 45.0
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-31 141.0 187 45.5
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 5.5e-30 135.6 152 46.7
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 7.2e-30 135.2 132 56.8
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-29 134.0 189 42.9
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.6e-29 134.0 222 44.1
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.6e-29 132.9 189 43.4
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 3.6e-29 132.9 240 35.8
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.1e-29 132.1 203 41.4
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 3.0e-28 129.8 137 51.8
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.7e-28 128.6 155 48.4
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.7e-28 128.6 133 51.1
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-27 127.9 180 42.8
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 2.5e-27 126.7 214 39.7
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.4e-25 120.9 186 41.9
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-24 117.9 153 41.8
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-24 116.3 168 42.9
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.7e-24 115.2 154 44.2
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 5.0e-23 112.5 118 48.3
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 6.5e-23 112.1 139 43.2
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.9e-22 110.5 172 41.9
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 1.9e-22 110.5 167 39.5
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 3.2e-22 109.8 170 39.4
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 3.2e-22 109.8 170 39.4
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 3.2e-22 109.8 127 43.3
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.5e-22 109.0 113 54.9
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 5.5e-22 109.0 166 40.4
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 5.5e-22 109.0 172 38.4
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 5.5e-22 109.0 166 40.4
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 9.4e-22 108.2 167 41.3
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 9.4e-22 108.2 167 41.3
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 9.4e-22 108.2 118 47.5
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.4e-22 108.2 118 47.5
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.4e-22 108.2 118 47.5
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.6e-21 107.5 167 39.5
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.6e-21 107.5 167 39.5
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 2.1e-21 107.1 169 40.8
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 2.7e-21 106.7 124 46.0
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.7e-21 106.7 165 38.2
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 3.6e-21 106.3 167 40.7
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 4.6e-21 105.9 169 40.8
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 7.9e-21 105.1 118 48.3
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 1.0e-20 104.8 167 40.7
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 1.0e-20 104.8 167 40.7
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.0e-20 104.8 124 46.0
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 1.0e-20 104.8 116 47.4
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 1.4e-20 104.4 168 39.3
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.4e-20 104.4 129 42.6
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 3.9e-20 102.8 116 44.8
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.9e-20 102.8 116 44.8
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 3.9e-20 102.8 116 44.8
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 3.9e-20 102.8 124 43.5
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.1e-20 102.4 116 45.7
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.7e-20 102.1 116 44.8
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 6.7e-20 102.1 124 41.9
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 8.8e-20 101.7 118 49.2
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.0e-19 100.5 124 43.5
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.7e-18 97.4 127 39.4
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.7e-18 97.4 119 42.0
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 2.8e-18 96.7 146 39.7
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.3e-18 95.5 117 42.7
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 6.3e-18 95.5 124 41.9
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 8.2e-18 95.1 126 42.1
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.4e-17 94.4 117 41.9
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.4e-17 94.4 116 41.4
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 1.4e-17 94.4 112 42.9
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-17 93.6 143 42.0
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.4e-17 93.6 131 38.9
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 3.1e-17 93.2 117 44.4
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 4.1e-17 92.8 162 37.0
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 5.3e-17 92.4 136 42.6
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 5.3e-17 92.4 147 37.4
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 5.3e-17 92.4 114 40.4
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.9e-17 92.0 160 36.2
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.9e-17 92.0 159 35.8
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 6.9e-17 92.0 128 39.8
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 6.9e-17 92.0 147 37.4
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 9.1e-17 91.7 131 41.2
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.2e-16 91.3 112 42.0
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.5e-16 90.9 134 47.0
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 2.6e-16 90.1 114 39.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.6e-16 90.1 116 40.5
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 3.4e-16 89.7 110 41.8
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.9e-16 89.0 116 38.8
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 5.9e-16 89.0 114 42.1
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 5.9e-16 89.0 113 39.8
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 7.7e-16 88.6 111 42.3
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 2.2e-15 87.0 114 41.2
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 2.2e-15 87.0 114 39.5
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 2.9e-15 86.7 129 37.2
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 2.9e-15 86.7 114 37.7
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 3.8e-15 86.3 108 42.6
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 5.0e-15 85.9 114 39.5
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.5e-15 85.5 126 39.7
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 6.5e-15 85.5 110 41.8
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 6.5e-15 85.5 129 38.0
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 8.5e-15 85.1 129 37.2
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 8.5e-15 85.1 116 39.7
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 8.5e-15 85.1 116 38.8
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 8.5e-15 85.1 131 40.5
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 8.5e-15 85.1 131 40.5
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.1e-14 84.7 111 45.0
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 1.9e-14 84.0 189 31.7
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.5e-14 83.6 114 39.5
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 3.2e-14 83.2 116 42.2
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 3.2e-14 83.2 189 31.7
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 4.2e-14 82.8 137 37.2
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 4.2e-14 82.8 134 34.3
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 5.5e-14 82.4 115 40.0
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 5.5e-14 82.4 182 32.4
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 5.5e-14 82.4 189 31.2
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 5.5e-14 82.4 189 31.7
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 7.2e-14 82.0 112 39.3
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 7.2e-14 82.0 124 38.7
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 7.2e-14 82.0 110 40.9
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 7.2e-14 82.0 113 38.9
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 9.4e-14 81.6 115 39.1
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 1.2e-13 81.3 114 38.6
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.2e-13 81.3 114 40.4
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 1.2e-13 81.3 115 36.5
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-12 77.8 114 40.4
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-12 77.4 133 32.3
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 6.7e-12 75.5 147 34.0
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 8.8e-12 75.1 112 38.4
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 2.6e-11 73.6 110 39.1
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.3e-11 73.2 117 39.3
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 4.4e-11 72.8 121 35.5
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 5.7e-11 72.4 119 34.5
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 9.7e-11 71.6 116 34.5
Aa31LG6G9550 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.2e-10 70.5 74 45.9
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 2.2e-10 70.5 211 29.9
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 2.2e-10 70.5 116 34.5
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.4e-09 67.8 129 32.6
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 1.4e-09 67.8 194 29.4
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 1.8e-09 67.4 87 47.1
Aa31LG8G17180 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-09 67.0 118 33.9
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 1.2e-08 64.7 108 36.1
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 2.0e-08 63.9 108 33.3
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-07 61.6 65 49.2
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.0e-07 61.6 128 32.8
BolC4t22940H Brassica oleracea HOM05D002733 ORTHO05D003856 1.7e-07 60.8 59 54.2
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.2e-07 60.5 116 32.8
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.9e-07 60.1 93 38.7
BcaC01g00056 Brassica carinata HOM05D010480 ORTHO05D003856 3.8e-07 59.7 115 39.1
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.5e-06 57.8 107 34.6
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 2.5e-06 57.0 82 46.3
BcaB02g09091 Brassica carinata HOM05D010480 ORTHO05D003856 4.2e-06 56.2 55 45.5


User provided reference genes

Program Settings