Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.7e-94 348.6 171 100.0
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 9.1e-82 307.0 171 87.1
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 9.1e-82 307.0 171 87.1
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 9.1e-82 307.0 171 87.1
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 9.5e-79 297.0 171 84.2
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 2.1e-78 295.8 171 83.6
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-77 292.0 171 85.4
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 5.2e-77 291.2 171 84.2
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 2.6e-76 288.9 171 82.5
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 3.4e-76 288.5 171 81.9
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 7.5e-76 287.3 171 83.0
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 7.5e-76 287.3 165 83.6
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-72 276.6 172 79.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-72 275.4 172 79.7
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.3e-71 271.6 173 78.6
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 9.8e-68 260.4 165 75.8
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.2e-53 211.5 171 66.1
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.0e-52 209.5 170 65.3
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 5.8e-52 208.0 170 66.5
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 5.8e-52 208.0 171 65.5
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.7e-51 205.3 162 67.9
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 3.7e-51 205.3 171 64.9
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 8.3e-51 204.1 170 65.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 8.3e-51 204.1 163 66.9
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-50 203.4 163 65.0
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.4e-50 203.4 163 65.0
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.1e-50 201.8 174 63.2
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 4.1e-50 201.8 170 63.5
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 4.1e-50 201.8 170 63.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 4.1e-50 201.8 170 64.7
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 7.1e-50 201.1 176 62.5
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-49 198.4 164 64.6
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 4.9e-43 178.3 96 83.3
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-42 176.0 164 59.8
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.1e-41 172.9 160 56.2
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 3.5e-41 172.2 156 62.2
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.6e-39 164.9 161 57.1
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.6e-39 164.9 153 58.2
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 5.3e-37 158.3 144 57.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.4e-36 155.6 128 59.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-35 153.3 161 54.7
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.8e-35 152.1 128 58.6
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-35 151.8 152 55.9
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 4.9e-35 151.8 152 55.9
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 4.9e-35 151.8 152 55.9
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 4.9e-35 151.8 128 59.4
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.4e-35 151.4 128 58.6
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.9e-34 149.8 136 57.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 6.0e-33 144.8 154 53.2
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 6.0e-33 144.8 154 53.2
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 6.0e-33 144.8 154 53.2
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 6.0e-33 144.8 154 53.2
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 6.0e-33 144.8 154 53.2
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.6e-30 136.7 155 50.3
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 2.1e-30 136.3 154 50.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-30 136.0 142 54.2
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 3.6e-30 135.6 101 64.4
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 6.4e-27 124.8 140 45.7
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 3.2e-26 122.5 142 44.4
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 3.5e-25 119.0 137 46.7
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 3.5e-25 119.0 146 43.8
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 6.0e-25 118.2 137 45.3
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.0e-24 117.5 144 41.7
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.0e-24 117.5 142 46.5
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.3e-24 117.1 139 43.2
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.1e-24 115.2 191 38.2
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 6.7e-24 114.8 132 45.5
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.5e-23 113.6 175 43.4
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.5e-23 113.6 133 45.9
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.3e-23 112.5 146 38.4
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.3e-23 112.5 135 46.7
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 4.3e-23 112.1 138 44.2
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 5.6e-23 111.7 165 40.6
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.6e-23 111.7 163 41.7
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 5.6e-23 111.7 171 39.2
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 7.4e-23 111.3 149 40.3
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 7.4e-23 111.3 173 39.9
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 9.6e-23 110.9 143 44.8
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.1e-22 109.8 151 38.4
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 2.1e-22 109.8 173 38.2
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 2.8e-22 109.4 132 44.7
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.7e-22 109.0 135 43.0
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 3.7e-22 109.0 183 39.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 3.7e-22 109.0 150 39.3
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.2e-22 108.2 157 39.5
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 8.1e-22 107.8 177 38.4
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 8.1e-22 107.8 126 46.0
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.1e-21 107.5 158 39.9
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.1e-21 107.5 134 44.8
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.4e-21 107.1 175 39.4
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.4e-21 107.1 155 38.7
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.4e-21 107.1 143 40.6
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.8e-21 106.7 144 43.1
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.8e-21 106.7 146 41.8
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.4e-21 106.3 141 41.1
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.4e-21 106.3 141 41.1
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 4.0e-21 105.5 179 39.1
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 4.0e-21 105.5 165 38.8
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 4.0e-21 105.5 157 36.9
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.3e-21 105.1 178 39.3
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 6.9e-21 104.8 135 42.2
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 6.9e-21 104.8 143 38.5
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 6.9e-21 104.8 171 39.8
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 6.9e-21 104.8 148 39.9
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.2e-20 104.0 182 37.9
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.2e-20 104.0 149 40.3
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.2e-20 104.0 149 40.3
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.2e-20 104.0 160 39.4
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.2e-20 104.0 156 37.8
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.5e-20 103.6 183 35.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.5e-20 103.6 132 44.7
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.0e-20 103.2 164 40.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 2.0e-20 103.2 169 39.6
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.0e-20 103.2 176 36.9
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.0e-20 103.2 131 43.5
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 2.6e-20 102.8 137 41.6
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.6e-20 102.8 171 36.8
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 2.6e-20 102.8 176 38.6
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.6e-20 102.8 131 43.5
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 3.4e-20 102.4 184 40.8
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 5.8e-20 101.7 123 44.7
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 5.8e-20 101.7 173 40.5
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.8e-20 101.7 133 39.8
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.8e-20 101.7 133 39.8
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.0e-19 100.9 143 40.6
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.0e-19 100.9 143 42.0
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 1.3e-19 100.5 180 37.2
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.7e-19 100.1 165 39.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.7e-19 100.1 146 38.4
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.2e-19 99.8 162 37.0
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 2.2e-19 99.8 163 36.2
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.2e-19 99.8 139 39.6
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 2.9e-19 99.4 136 41.9
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.9e-19 99.4 140 41.4
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.9e-19 99.4 132 41.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 2.9e-19 99.4 161 34.8
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 2.9e-19 99.4 145 37.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.9e-19 99.4 136 41.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 3.8e-19 99.0 141 41.1
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 4.9e-19 98.6 146 37.7
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.9e-19 98.6 136 40.4
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 6.5e-19 98.2 181 37.0
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 8.4e-19 97.8 144 42.4
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.1e-18 97.4 178 36.0
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.4e-18 97.1 149 37.6
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 2.5e-18 96.3 170 38.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.5e-18 96.3 139 38.8
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 3.2e-18 95.9 171 38.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 3.2e-18 95.9 136 41.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 4.2e-18 95.5 154 40.3
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 4.2e-18 95.5 136 40.4
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 4.2e-18 95.5 133 42.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 5.5e-18 95.1 148 38.5
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 5.5e-18 95.1 138 41.3
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.5e-18 95.1 186 36.0
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 7.1e-18 94.7 155 36.8
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.1e-17 93.2 138 40.6
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 2.1e-17 93.2 165 37.6
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 2.7e-17 92.8 169 37.9
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 2.7e-17 92.8 165 35.2
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 3.5e-17 92.4 151 37.7
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 3.5e-17 92.4 178 36.0
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 6.0e-17 91.7 147 37.4
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.3e-16 90.5 130 41.5
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.8e-16 90.1 166 33.7
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.0e-16 89.4 152 36.8
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.9e-15 86.7 176 35.2
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.9e-15 86.7 183 36.1
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 3.3e-15 85.9 169 34.3
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.3e-15 85.5 145 40.0
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 5.7e-15 85.1 169 33.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.6e-14 83.6 91 45.1
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.6e-14 83.6 122 41.0
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 6.2e-14 81.6 103 46.6
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.8e-13 80.1 169 38.5
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 4.1e-13 79.0 146 34.9
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.7e-11 73.6 106 34.9
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.2e-11 73.2 111 38.7
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 6.1e-09 65.1 89 47.2
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 2.3e-08 63.2 65 55.4


User provided reference genes

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