Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 4.6e-103 377.9 186 100.0
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 3.5e-95 351.7 186 90.9
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 3.6e-92 341.7 184 90.2
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 8.1e-92 340.5 184 89.7
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.8e-91 339.3 184 90.2
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 4.0e-91 338.2 185 89.7
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.5e-90 336.3 184 86.4
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.6e-90 335.5 184 85.9
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.6e-90 335.5 184 85.9
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.4e-90 335.1 184 87.0
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 9.9e-90 333.6 182 89.0
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.2e-89 332.4 183 88.5
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.8e-89 331.6 182 89.0
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.1e-88 330.1 184 84.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 5.6e-85 317.8 184 82.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.5e-82 309.7 169 89.3
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 4.6e-79 298.1 182 78.6
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 6.9e-75 284.3 182 74.7
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 6.9e-75 284.3 182 74.7
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 6.9e-75 284.3 182 74.7
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 6.9e-75 284.3 182 75.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.5e-74 283.1 182 74.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.4e-74 282.0 182 76.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.0e-73 280.4 182 74.2
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 4.6e-71 271.6 182 73.6
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.3e-70 270.0 182 72.5
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 7.4e-69 264.2 182 70.9
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 9.7e-69 263.8 184 69.6
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.6e-68 263.1 182 72.0
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 3.7e-68 261.9 181 67.4
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 4.8e-68 261.5 184 66.3
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 8.2e-68 260.8 184 66.8
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.1e-67 260.4 184 66.8
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 6.9e-67 257.7 183 68.9
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 9.0e-67 257.3 184 65.8
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.0e-66 256.1 182 69.2
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.0e-66 256.1 184 65.2
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.6e-66 255.8 184 66.3
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 3.4e-66 255.4 182 67.0
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 4.5e-66 255.0 184 65.2
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.3e-65 253.4 182 66.5
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.3e-65 253.4 184 66.3
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.7e-65 253.1 165 70.9
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.7e-65 253.1 183 67.2
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 3.8e-65 251.9 184 65.8
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 3.8e-65 251.9 184 66.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 5.0e-65 251.5 182 66.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 5.0e-65 251.5 183 69.4
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.1e-64 250.4 184 63.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.4e-64 250.0 183 67.2
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 5.5e-64 248.1 184 66.3
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 5.5e-64 248.1 188 64.9
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 7.2e-64 247.7 180 63.9
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.6e-63 246.5 184 62.0
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.7e-63 245.7 184 65.2
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.6e-63 245.4 185 66.5
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.6e-63 245.0 182 66.5
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 4.6e-63 245.0 183 66.1
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.9e-63 244.2 182 66.5
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.0e-62 243.8 184 65.2
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.0e-62 243.8 184 63.6
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.0e-62 243.8 183 66.1
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.4e-62 243.4 183 65.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.4e-62 243.4 185 64.3
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.4e-62 243.4 184 63.6
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.3e-62 242.7 184 63.0
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.3e-62 242.7 184 63.0
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 3.9e-62 241.9 182 63.7
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.9e-62 241.9 183 65.6
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 8.8e-62 240.7 183 64.5
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.1e-61 240.4 182 63.2
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.5e-61 240.0 184 63.6
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 5.7e-61 238.0 183 65.0
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 9.7e-61 237.3 182 67.6
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.7e-60 236.5 183 65.6
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 2.8e-60 235.7 178 64.6
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 4.8e-60 235.0 203 58.6
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 6.3e-60 234.6 182 62.6
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.4e-59 233.4 185 63.8
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.4e-59 232.6 182 62.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.5e-58 229.9 165 67.3
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.0e-58 229.6 183 62.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 7.7e-58 227.6 182 61.0
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.7e-57 226.5 182 60.4
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.0e-57 224.9 183 60.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 6.5e-57 224.6 184 62.0
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 8.5e-57 224.2 182 59.9
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.1e-56 223.8 184 60.9
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.4e-56 223.4 165 71.5
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.4e-56 223.4 182 61.5
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.4e-56 223.4 184 60.9
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.6e-55 219.9 185 61.1
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.0e-54 217.2 182 58.2
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 3.0e-54 215.7 185 60.5
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 5.1e-54 214.9 183 57.9
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 5.1e-54 214.9 185 59.5
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.5e-53 213.4 185 59.5
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 5.7e-53 211.5 185 58.4
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 7.4e-53 211.1 185 57.8
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 7.4e-53 211.1 183 60.7
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.3e-52 210.3 185 59.5
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.8e-52 209.1 185 58.4
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.8e-52 209.1 185 58.4
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 3.7e-52 208.8 183 60.1
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 8.2e-52 207.6 185 57.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.8e-51 206.5 185 57.8
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.1e-51 205.7 150 66.7
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.2e-50 203.8 185 56.2
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.7e-49 199.9 113 81.4
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.9e-49 199.1 184 56.0
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.6e-47 193.4 157 59.9
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 8.0e-47 191.0 103 85.4
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 8.0e-47 191.0 183 54.1
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 4.4e-45 185.3 182 57.1
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 5.7e-45 184.9 198 52.5
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 9.7e-45 184.1 168 59.5
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.7e-44 183.3 185 51.9
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 4.8e-44 181.8 182 51.1
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.1e-43 180.6 185 54.6
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 9.1e-43 177.6 183 50.3
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.6e-42 176.8 148 58.1
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 2.0e-42 176.4 146 61.6
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 6.5e-41 171.4 203 48.3
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 4.2e-40 168.7 166 54.8
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.6e-39 165.6 163 55.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.4e-37 158.7 183 48.6
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 7.5e-37 157.9 183 49.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 9.7e-37 157.5 137 63.5
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-36 156.8 185 45.4
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 4.8e-36 155.2 187 41.2
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.3e-36 154.5 149 53.7
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 3.0e-30 136.0 71 88.7
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.6e-23 112.5 104 52.9
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 8.0e-23 111.3 117 50.4
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 4.4e-21 105.5 169 34.9
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.8e-20 102.8 98 56.1
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.2e-18 97.4 190 30.0
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 6.6e-17 91.7 72 56.9
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.5e-16 90.5 79 63.3
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.2e-15 87.4 62 62.9
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 3.3e-08 62.8 32 87.5
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 2.8e-07 59.7 142 29.6
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 3.6e-07 59.3 38 63.2


User provided reference genes

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