Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 1.9e-115 419.5 252 100.0
Thhalv10017194m.g Eutrema salsugineum HOM05D010943 ORTHO05D005138 1.7e-68 263.5 253 73.1
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 5.0e-68 261.9 303 60.7
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 1.0e-60 237.7 266 58.6
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 1.7e-60 236.9 266 58.6
A03p22480 Brassica napus HOM05D010943 ORTHO05D005138 1.2e-53 214.2 264 64.0
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 3.5e-53 212.6 271 61.3
BcaC01g05445 Brassica carinata HOM05D010943 ORTHO05D005138 5.0e-52 208.8 278 60.8
A05p06410 Brassica napus HOM05D001301 ORTHO05D001169 5.0e-52 208.8 282 56.4
C03p26630 Brassica napus HOM05D010943 ORTHO05D005138 5.0e-52 208.8 278 60.8
BolC3t15048H Brassica oleracea HOM05D010943 ORTHO05D005138 7.2e-51 204.9 276 61.6
BcaC03g15045 Brassica carinata HOM05D010943 ORTHO05D005138 1.2e-50 204.1 254 58.7
BraA03t11475Z Brassica rapa HOM05D010943 ORTHO05D005138 4.7e-50 202.2 254 64.2
BolC2t08666H Brassica oleracea HOM05D010943 ORTHO05D005138 1.0e-49 201.1 220 65.0
BcaB01g03596 Brassica carinata HOM05D010943 ORTHO05D005138 4.8e-47 192.2 255 59.6
Carub.0001s3571 Capsella rubella HOM05D010943 ORTHO05D005138 1.4e-41 174.1 244 45.5
AL4G37660 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 4.1e-38 162.5 272 52.9
Carub.0004s2218 Capsella rubella HOM05D010943 ORTHO05D005138 1.6e-37 160.6 307 45.9
Aa31LG5G19580 Aethionema arabicum HOM05D010943 ORTHO05D005138 2.6e-32 143.3 300 44.0
CARHR134980 Cardamine hirsuta HOM05D010943 ORTHO05D005138 1.4e-30 137.5 259 44.0
AL1G53000 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 4.1e-30 136.0 244 40.2
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 4.6e-21 105.9 271 33.6
AT2G40020 Arabidopsis thaliana HOM05D010943 ORTHO05D005138 5.2e-17 92.4 196 51.0
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 6.6e-12 75.5 79 49.4
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 5.6e-11 72.4 66 50.0
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 9.5e-11 71.6 83 49.4
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 1.2e-10 71.2 73 53.4
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.8e-10 70.1 69 47.8
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 2.8e-10 70.1 66 54.5
AT1G45248 Arabidopsis thaliana HOM05D010943 ORTHO05D005138 4.7e-10 69.3 62 58.1
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 8.1e-10 68.6 271 28.8
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 8.1e-10 68.6 78 47.4
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 1.4e-09 67.8 271 30.3
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 1.8e-09 67.4 83 44.6
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 1.8e-09 67.4 257 27.6
SalBow6G7137 Salvia bowleyana HOM05D006281 ORTHO05D005138 1.8e-09 67.4 77 46.8
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 3.1e-09 66.6 61 55.7
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 4.0e-09 66.2 69 47.8
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 5.2e-09 65.9 83 43.4
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 5.2e-09 65.9 68 50.0
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 6.8e-09 65.5 79 44.3
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 8.9e-09 65.1 71 46.5
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 8.9e-09 65.1 250 26.8
PGR142G2970 Punica granatum HOM05D006281 ORTHO05D005138 8.9e-09 65.1 84 47.6
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 1.2e-08 64.7 79 45.6
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 1.5e-08 64.3 69 47.8
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 1.5e-08 64.3 65 52.3
Nitab4.5_0000802g0130 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.0e-08 63.9 59 50.8
Phvul.008G225200 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 2.0e-08 63.9 78 47.4
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 2.6e-08 63.5 70 50.0
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 2.6e-08 63.5 71 42.3
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 2.6e-08 63.5 79 46.8
HanXRQChr12g0367471 Helianthus annuus HOM05D006281 ORTHO05D005138 3.4e-08 63.2 78 47.4
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 3.4e-08 63.2 68 45.6
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 4.4e-08 62.8 71 47.9
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 5.8e-08 62.4 72 48.6
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 5.8e-08 62.4 79 45.6
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 5.8e-08 62.4 79 45.6
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 7.6e-08 62.0 71 43.7
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 9.9e-08 61.6 85 43.5
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 9.9e-08 61.6 71 47.9
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 9.9e-08 61.6 83 45.8
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 9.9e-08 61.6 79 43.0
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 9.9e-08 61.6 76 46.1
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 1.3e-07 61.2 71 45.1
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 1.3e-07 61.2 70 47.1
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 1.7e-07 60.8 241 29.0
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 1.7e-07 60.8 76 43.4
Cc02_g06750 Coffea canephora HOM05D006281 ORTHO05D005138 2.2e-07 60.5 72 48.6
PGR142G2831 Punica granatum HOM05D006281 ORTHO05D005138 2.2e-07 60.5 70 48.6
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 2.9e-07 60.1 68 50.0
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 2.9e-07 60.1 75 41.3
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 2.9e-07 60.1 65 52.3
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 2.9e-07 60.1 71 47.9
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 2.9e-07 60.1 68 47.1
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 3.7e-07 59.7 65 52.3
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 3.7e-07 59.7 65 49.2
Aqoxy3G02946 Aquilegia oxysepala HOM05D006281 ORTHO05D005138 4.9e-07 59.3 73 46.6
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 4.9e-07 59.3 64 51.6
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 4.9e-07 59.3 86 39.5
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 6.4e-07 58.9 72 48.6
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 6.4e-07 58.9 83 44.6
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 6.4e-07 58.9 67 49.3
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 8.3e-07 58.5 66 48.5
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 8.3e-07 58.5 65 52.3
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 8.3e-07 58.5 63 44.4
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 1.1e-06 58.2 56 48.2
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 1.1e-06 58.2 72 48.6
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.4e-06 57.8 84 41.7
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 1.9e-06 57.4 81 42.0
CiPaw.16G099300 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.9e-06 57.4 81 45.7
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 1.9e-06 57.4 251 26.7
Nitab4.5_0005628g0030 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.9e-06 57.4 71 46.5
DCAR_024837 Daucus carota HOM05D006281 ORTHO05D005138 2.4e-06 57.0 66 48.5
MD17G1067400 Malus domestica HOM05D006281 ORTHO05D005138 2.4e-06 57.0 79 48.1
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 2.4e-06 57.0 60 48.3
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 3.2e-06 56.6 77 42.9
Migut.F00696 Erythranthe guttata HOM05D006281 ORTHO05D005138 4.1e-06 56.2 83 41.0
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 4.1e-06 56.2 70 47.1
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 4.1e-06 56.2 70 47.1
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 4.1e-06 56.2 83 41.0
Haze_25248 Corylus avellana HOM05D006281 ORTHO05D005138 7.1e-06 55.5 67 46.3
Glyma.02G255900 Glycine max HOM05D006281 ORTHO05D005138 9.2e-06 55.1 82 45.1
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 9.2e-06 55.1 77 42.9


User provided reference genes

Program Settings