Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.4e-251 872.5 434 100.0
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.6e-231 804.3 439 91.8
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.3e-227 790.8 437 90.6
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.6e-226 788.5 442 90.3
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.6e-223 779.2 437 89.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 5.1e-222 774.2 435 89.0
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.2e-216 755.0 434 85.3
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 4.7e-215 751.1 435 85.3
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 4.4e-213 744.6 434 84.1
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 5.7e-213 744.2 434 84.6
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 7.4e-213 743.8 436 83.7
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-212 741.1 435 83.2
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-207 726.5 434 83.6
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.8e-203 712.6 436 81.2
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 7.0e-203 710.7 436 80.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-202 709.1 436 81.2
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-200 702.2 436 80.5
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-199 699.1 436 79.8
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-199 699.1 436 79.8
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 8.8e-198 693.7 438 80.4
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.7e-196 688.3 435 78.9
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.7e-196 688.3 435 78.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 5.9e-194 681.0 435 77.9
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-193 679.1 435 77.9
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-189 664.8 436 76.1
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.8e-185 651.7 441 73.9
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.5e-181 639.8 439 73.6
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.3e-180 634.0 440 73.2
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.3e-176 622.1 438 71.7
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-172 609.8 436 70.6
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.7e-172 609.8 436 70.6
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 6.4e-172 607.8 436 70.4
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-171 606.7 436 70.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.4e-171 605.9 427 72.6
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.4e-171 604.7 439 71.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.9e-169 598.6 436 69.5
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 9.5e-168 594.0 417 72.2
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.9e-156 555.8 467 60.8
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 6.8e-150 534.6 468 59.6
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 4.4e-149 531.9 466 57.7
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.7e-148 530.0 462 58.4
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.7e-148 530.0 458 58.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.4e-148 528.1 458 58.5
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.2e-147 525.8 466 58.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 4.2e-147 525.4 441 59.0
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 5.4e-147 525.0 466 58.2
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.1e-147 524.6 458 58.3
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 7.1e-147 524.6 435 60.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.7e-146 522.7 462 57.4
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 7.8e-146 521.2 466 57.9
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.7e-145 520.0 466 58.6
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.7e-145 520.0 467 56.1
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.0e-145 519.2 466 57.1
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 5.1e-145 518.5 470 55.7
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 6.6e-145 518.1 468 57.9
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.3e-144 515.8 465 57.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.3e-144 515.4 466 56.4
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.3e-144 514.6 467 55.7
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.3e-143 513.8 468 55.3
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-143 513.1 465 57.4
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.8e-143 512.7 465 57.4
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.8e-143 512.7 473 53.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.2e-143 511.5 465 56.3
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 8.1e-143 511.1 467 54.4
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.1e-143 511.1 467 55.7
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.4e-142 510.4 470 55.3
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.4e-142 510.4 465 57.2
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.8e-142 510.0 467 55.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.1e-142 509.2 466 56.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.5e-141 506.9 458 56.1
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 7.6e-141 504.6 469 54.4
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.7e-140 503.4 473 53.5
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.7e-140 503.4 467 55.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.7e-140 503.4 469 55.9
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.8e-140 502.3 466 54.5
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.1e-139 500.7 463 54.6
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-139 500.7 451 55.2
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.2e-139 499.2 458 54.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.2e-138 497.3 447 58.4
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.6e-138 496.9 468 54.5
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.7e-138 496.1 472 55.1
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 7.8e-138 494.6 465 56.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.7e-137 493.4 466 54.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 5.1e-137 491.9 448 56.5
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.9e-136 490.0 451 54.8
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.5e-136 489.6 465 54.2
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.3e-136 489.2 467 54.6
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.3e-136 489.2 467 54.2
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 4.3e-136 488.8 454 54.0
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 8.1e-135 484.6 476 53.2
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.4e-134 483.8 453 53.0
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.0e-134 482.3 453 53.9
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 9.0e-134 481.1 453 55.8
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 9.0e-134 481.1 460 54.8
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.2e-133 480.7 470 52.3
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.6e-133 479.6 463 53.1
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.6e-133 479.6 453 53.4
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.6e-133 479.6 453 54.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 5.8e-133 478.4 436 58.9
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 7.6e-133 478.0 449 53.0
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.9e-132 476.1 472 53.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 3.8e-132 475.7 474 53.2
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.1e-131 474.2 447 54.8
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.4e-131 473.0 468 53.6
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.2e-131 472.2 472 52.8
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 8.7e-129 464.5 454 53.1
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.5e-128 463.8 472 53.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 3.3e-128 462.6 473 52.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.3e-128 462.2 324 72.8
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 5.6e-128 461.8 451 52.1
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 7.4e-128 461.5 464 51.1
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 7.4e-128 461.5 449 54.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 9.6e-128 461.1 467 51.8
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.8e-127 459.5 463 52.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 8.1e-127 458.0 455 51.4
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 9.0e-126 454.5 463 51.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.5e-125 453.8 470 50.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.5e-125 453.8 464 52.4
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.4e-125 452.6 466 52.1
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.8e-125 451.8 464 50.4
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.3e-124 450.7 446 51.1
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 4.9e-124 448.7 455 49.7
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 6.4e-124 448.4 450 51.8
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.1e-123 447.6 453 51.2
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.1e-123 447.6 448 50.4
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.0e-122 441.8 454 49.3
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.3e-121 440.7 452 48.2
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.3e-121 439.9 440 51.1
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.3e-121 439.9 465 50.1
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 8.7e-121 438.0 447 49.7
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 3.3e-120 436.0 444 50.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-119 434.1 465 49.9
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-119 434.1 462 49.8
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-119 433.7 467 49.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 4.8e-119 432.2 470 50.6
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-118 428.7 434 49.5
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 2.0e-117 426.8 446 49.6
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.8e-116 422.5 440 50.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.3e-110 402.1 468 45.9
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.2e-109 401.0 400 51.5
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 5.0e-108 395.6 380 53.2
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 8.2e-103 378.3 431 46.4
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.5e-101 374.0 420 46.9
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.0e-100 371.3 438 47.7
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.2e-98 364.4 438 44.3
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 5.1e-97 359.0 290 60.7
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 5.1e-97 359.0 290 60.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 9.7e-96 354.8 425 44.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.5e-91 340.9 427 42.6
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.7e-88 328.2 430 41.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.8e-87 326.6 431 41.8
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.8e-87 325.9 430 42.1
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.2e-87 325.1 429 41.7
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 7.2e-83 312.0 203 76.4
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 9.4e-83 311.6 203 76.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.2e-75 286.2 419 39.9
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-67 261.2 164 79.3
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.6e-58 231.1 333 38.4
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 8.0e-58 228.8 338 43.8
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.3e-55 221.5 212 52.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 5.0e-52 209.5 278 49.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 5.2e-49 199.5 202 53.5
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 4.6e-45 186.4 200 49.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.0e-44 183.7 210 48.1
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 4.6e-29 133.3 123 61.0
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.3e-28 131.7 137 47.4
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.8e-26 123.2 330 28.2
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.4e-25 120.9 88 70.5
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.3e-23 115.2 90 68.9
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 3.1e-17 94.0 99 52.5
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 1.1e-14 85.5 64 75.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-11 73.9 47 76.6
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 3.7e-10 70.5 153 32.0


User provided reference genes

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