Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 0.0e+00 1135.2 634 100.0
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 7.9e-264 913.7 648 78.7
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.0e-263 913.3 642 82.4
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 3.7e-261 904.8 642 81.8
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.1e-249 866.7 639 77.3
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.1e-249 866.7 639 77.3
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 3.6e-248 861.7 594 84.5
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.7e-240 835.5 639 76.2
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 3.9e-202 708.8 484 83.3
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.5e-201 706.8 687 65.5
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.5e-161 573.9 692 55.8
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 9.4e-132 474.9 663 47.5
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.7e-131 472.6 654 48.2
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 6.1e-131 472.2 597 48.7
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 8.8e-130 468.4 654 47.9
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 8.8e-130 468.4 659 47.6
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.1e-129 468.0 659 47.5
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.7e-128 464.2 654 47.9
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 8.2e-128 461.8 657 47.8
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.1e-127 461.5 641 49.1
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.4e-127 461.1 631 48.3
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.6e-126 456.8 650 47.5
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 4.5e-126 456.1 668 45.2
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.7e-125 454.1 638 45.9
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.7e-125 454.1 674 45.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 6.5e-125 452.2 655 46.9
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.0e-122 444.9 664 45.6
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.0e-121 440.7 722 44.0
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 9.8e-121 438.3 657 47.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.0e-118 430.6 679 44.3
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.0e-118 430.6 679 44.3
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 2.0e-118 430.6 645 46.0
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 3.5e-118 429.9 627 47.2
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 2.9e-117 426.8 636 46.7
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 2.9e-117 426.8 592 45.8
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.1e-115 420.6 680 46.2
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.1e-115 420.6 641 46.6
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 4.7e-115 419.5 609 45.5
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.0e-114 418.3 631 45.2
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.3e-114 417.2 643 44.2
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 2.3e-114 417.2 649 44.5
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.5e-113 414.5 649 45.1
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 2.0e-113 414.1 652 44.9
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.7e-113 412.5 622 44.2
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 1.4e-111 407.9 657 44.3
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.4e-111 407.1 658 42.9
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.4e-111 407.1 634 45.1
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.1e-111 406.8 645 43.9
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 7.0e-111 405.6 644 44.6
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 2.7e-110 403.7 598 47.2
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.7e-110 403.7 680 42.2
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.5e-110 402.9 682 42.2
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.9e-110 402.5 689 44.0
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 1.7e-109 401.0 686 43.1
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.9e-109 400.2 686 44.0
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 5.0e-109 399.4 690 43.2
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 6.6e-109 399.1 667 42.7
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.1e-108 398.3 690 42.6
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 1.5e-108 397.9 639 44.1
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.9e-108 397.5 618 43.2
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 9.5e-108 395.2 596 44.6
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.5e-108 395.2 628 42.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 2.1e-107 394.0 634 42.9
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 3.6e-107 393.3 677 42.4
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 8.0e-107 392.1 680 42.8
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.0e-106 391.7 616 42.9
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.8e-106 391.0 687 41.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 6.3e-104 382.5 659 45.2
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.8e-103 380.9 678 41.2
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.2e-103 380.2 674 41.4
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.1e-103 379.8 588 42.9
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.2e-102 378.3 686 41.3
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.2e-102 378.3 651 41.2
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.6e-102 377.9 631 46.4
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 3.5e-102 376.7 550 45.1
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 7.8e-102 375.6 646 41.0
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 7.8e-102 375.6 602 43.0
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.3e-101 374.8 629 42.0
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.7e-101 374.4 637 42.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 5.0e-101 372.9 622 42.0
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.6e-101 372.5 698 40.8
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.1e-100 371.7 678 42.5
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.2e-99 368.2 666 40.4
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.6e-99 367.9 567 43.4
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.6e-99 366.7 735 38.5
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 2.3e-98 364.0 602 42.2
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 7.0e-95 352.4 603 42.3
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.2e-94 351.7 664 39.0
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.2e-94 351.7 638 40.0
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.9e-92 344.4 633 38.5
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 7.3e-92 342.4 773 36.0
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.3e-90 337.4 582 40.7
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.0e-90 336.7 654 39.3
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 2.9e-88 330.5 646 39.0
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.1e-87 328.6 643 38.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 6.0e-86 322.8 522 43.5
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.0e-85 322.0 591 39.8
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 6.6e-85 319.3 624 38.3
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 3.3e-84 317.0 523 43.4
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 9.5e-84 315.5 598 39.3
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.6e-83 314.7 548 39.6
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 1.1e-79 302.0 546 41.8
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 3.2e-79 300.4 531 42.0
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 4.6e-78 296.6 237 70.0
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 6.0e-78 296.2 577 39.5
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.5e-76 291.6 590 41.7
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 1.9e-76 291.2 702 36.2
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.8e-74 284.6 298 53.0
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.1e-71 275.4 608 37.3
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 3.5e-70 270.4 679 34.0
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 1.7e-69 268.1 189 68.8
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 8.7e-61 239.2 258 50.4
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 2.1e-59 234.6 505 37.4
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 3.8e-56 223.8 163 76.1
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.1e-55 222.2 252 47.2
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.0e-53 215.7 480 41.5
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 2.6e-49 201.1 404 39.6
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.2e-48 198.0 196 50.5
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 5.5e-47 193.4 242 44.6
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 1.8e-45 188.3 439 37.4
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 4.8e-43 180.3 492 33.5
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.6e-41 174.5 581 32.5
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 5.0e-40 170.2 201 42.8
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 6.5e-40 169.9 164 59.1
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 9.7e-36 156.0 151 59.6
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.2e-35 154.8 419 30.5
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 3.2e-31 141.0 110 62.7
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 2.7e-30 137.9 354 33.1
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 3.6e-30 137.5 159 50.3
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 8.2e-27 126.3 141 48.2
BcaB01g03581 Brassica carinata HOM05D004806 ORTHO05D005397 1.7e-24 118.6 97 70.1
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 6.1e-22 110.2 278 35.6
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 2.3e-21 108.2 74 63.5
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 9.1e-18 96.3 80 66.2
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.0e-17 95.1 145 40.0
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 7.2e-15 86.7 105 52.4
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 9.4e-15 86.3 132 47.0
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 1.6e-14 85.5 85 55.3
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 6.1e-14 83.6 72 52.8
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.0e-13 82.8 60 68.3
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 2.2e-11 75.1 48 75.0
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.8e-11 74.7 120 46.7
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.4e-10 72.4 108 49.1
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.1e-10 70.9 72 47.2
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 7.0e-10 70.1 114 43.0
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 2.9e-08 64.7 44 63.6
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 3.2e-07 61.2 42 59.5
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.1e-06 58.5 51 56.9
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 2.7e-06 58.2 55 43.6


User provided reference genes

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