Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.7e-123 446.0 227 100.0
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 3.2e-74 282.3 225 66.7
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-73 280.0 225 66.7
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 2.3e-72 276.2 225 65.8
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.3e-67 260.4 225 63.1
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 9.4e-58 227.6 225 59.6
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 5.0e-43 178.7 182 55.5
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 4.2e-42 175.6 182 54.9
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.6e-41 173.7 176 52.3
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.6e-41 173.7 180 55.6
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-41 173.7 183 54.1
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 1.6e-41 173.7 183 54.1
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.6e-41 172.6 215 47.0
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.3e-39 166.0 193 49.7
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-38 164.1 224 45.1
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.8e-37 160.2 224 44.6
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.8e-37 160.2 224 44.6
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 4.5e-36 155.6 171 52.6
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-35 153.7 182 50.5
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.8e-35 152.5 177 52.0
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-34 150.6 168 50.0
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 1.5e-34 150.6 229 40.6
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 4.2e-34 149.1 225 41.8
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 5.5e-34 148.7 174 47.7
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.4e-34 147.9 179 48.0
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 9.4e-34 147.9 181 46.4
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 9.4e-34 147.9 225 41.3
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 9.4e-34 147.9 225 41.3
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.7e-33 146.4 179 49.7
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 6.1e-33 145.2 225 42.2
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 1.4e-32 144.1 167 49.7
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.3e-32 143.3 174 50.0
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.2e-32 142.1 180 47.8
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-31 139.4 220 42.7
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.7e-31 138.7 173 48.0
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.8e-31 137.9 174 47.1
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-30 137.5 188 47.3
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 3.7e-30 136.0 128 55.5
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.3e-30 135.2 150 50.0
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.8e-29 133.7 174 43.7
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.4e-29 132.1 192 45.3
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.7e-28 129.8 151 49.7
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 7.7e-28 128.3 226 39.4
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 1.3e-27 127.5 218 41.3
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 2.9e-27 126.3 150 46.0
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 1.1e-26 124.4 171 44.4
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 1.1e-26 124.4 171 44.4
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.2e-26 122.9 155 47.7
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 3.2e-26 122.9 173 43.4
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.0e-25 118.2 175 45.7
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 8.0e-25 118.2 151 49.7
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 1.0e-24 117.9 165 43.6
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-24 117.1 176 42.6
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.0e-24 116.3 114 52.6
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 3.0e-24 116.3 172 45.3
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 3.0e-24 116.3 221 37.6
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 4.0e-24 115.9 139 43.9
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.0e-24 115.9 139 43.9
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.0e-24 115.9 139 43.9
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 5.2e-24 115.5 181 41.4
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 5.2e-24 115.5 166 44.0
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 6.8e-24 115.2 156 46.8
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.5e-23 114.0 140 43.6
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.5e-23 114.0 136 41.9
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 2.0e-23 113.6 172 44.2
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.0e-23 113.6 136 42.6
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 2.0e-23 113.6 125 47.2
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 2.6e-23 113.2 169 45.0
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 2.6e-23 113.2 169 45.0
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-23 112.8 114 56.1
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 7.5e-23 111.7 200 37.5
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 9.8e-23 111.3 160 40.6
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.3e-22 110.9 160 40.0
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.7e-22 110.5 114 50.9
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-22 110.5 139 43.9
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.7e-22 110.5 151 42.4
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.2e-22 110.2 140 47.1
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.2e-22 110.2 135 43.0
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-22 109.8 188 41.0
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 3.7e-22 109.4 219 36.5
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 3.7e-22 109.4 219 36.5
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 3.7e-22 109.4 139 43.9
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 3.7e-22 109.4 146 41.1
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 4.9e-22 109.0 182 37.9
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.3e-22 108.6 140 47.1
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 6.3e-22 108.6 149 42.3
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 6.3e-22 108.6 134 41.8
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-21 107.5 139 43.9
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.8e-21 107.1 135 41.5
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 2.4e-21 106.7 139 42.4
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 4.1e-21 105.9 219 36.5
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 4.1e-21 105.9 129 51.2
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 5.4e-21 105.5 180 37.8
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.0e-20 103.6 141 41.8
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 2.7e-20 103.2 141 40.4
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.5e-20 102.8 192 37.0
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 4.5e-20 102.4 142 38.7
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 4.5e-20 102.4 189 35.4
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.0e-19 101.3 145 40.0
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.0e-19 101.3 191 36.6
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.7e-19 100.5 145 40.0
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 2.3e-19 100.1 143 40.6
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.3e-19 100.1 127 46.5
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.9e-19 99.8 136 40.4
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 3.8e-19 99.4 215 33.0
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.0e-19 99.0 144 40.3
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 6.6e-19 98.6 150 36.0
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 8.6e-19 98.2 139 38.1
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.9e-18 97.1 161 38.5
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.5e-18 96.7 135 38.5
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 4.3e-18 95.9 130 39.2
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 5.6e-18 95.5 191 33.5
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 5.6e-18 95.5 131 43.5
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 5.6e-18 95.5 131 42.0
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 7.2e-18 95.1 123 42.3
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 7.2e-18 95.1 123 42.3
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 9.5e-18 94.7 127 42.5
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.2e-17 94.4 130 40.0
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 1.2e-17 94.4 131 41.2
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.2e-17 94.4 155 37.4
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.6e-17 94.0 131 41.2
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 2.8e-17 93.2 131 41.2
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.8e-17 93.2 131 41.2
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 3.6e-17 92.8 134 42.5
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 8.0e-17 91.7 188 34.0
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 8.0e-17 91.7 134 41.0
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.0e-16 91.3 125 42.4
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 1.4e-16 90.9 138 37.7
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-16 90.9 129 40.3
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.4e-16 90.9 139 37.4
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-16 90.9 127 39.4
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.8e-16 90.5 124 42.7
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 2.3e-16 90.1 120 42.5
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 3.0e-16 89.7 141 39.0
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 4.0e-16 89.4 123 41.5
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 5.2e-16 89.0 154 35.7
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 8.9e-16 88.2 128 38.3
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.2e-15 87.8 173 36.4
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 1.5e-15 87.4 160 36.9
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 2.0e-15 87.0 131 38.2
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 2.0e-15 87.0 160 36.9
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.4e-15 86.3 127 37.0
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 3.4e-15 86.3 128 37.5
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 3.4e-15 86.3 122 38.5
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 4.4e-15 85.9 199 32.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 5.7e-15 85.5 125 40.8
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 5.7e-15 85.5 115 40.9
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 7.5e-15 85.1 126 36.5
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 9.8e-15 84.7 135 37.8
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.2e-14 83.6 131 36.6
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 2.2e-14 83.6 158 33.5
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 2.2e-14 83.6 113 40.7
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 1.1e-13 81.3 146 34.9
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 1.4e-13 80.9 118 39.0
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 1.8e-13 80.5 114 42.1
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 3.2e-13 79.7 118 41.5
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 2.0e-12 77.0 102 40.2
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 2.7e-12 76.6 118 37.3
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 3.5e-12 76.3 133 31.6
BcaC01g00056 Brassica carinata HOM05D010480 ORTHO05D003856 4.6e-12 75.9 120 45.0
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 4.6e-12 75.9 98 43.9
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 7.8e-12 75.1 116 40.5
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.0e-11 74.7 131 43.5
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.3e-11 74.3 127 35.4
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 1.3e-11 74.3 132 34.1
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.9e-11 72.8 117 40.2
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 3.9e-11 72.8 209 31.1
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 8.6e-11 71.6 108 38.0
Aa31LG8G17180 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-10 70.9 97 43.3
COL.COLO4_10852 Corchorus olitorius HOM05D001713 ORTHO05D001669 3.3e-10 69.7 87 43.7
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 3.3e-10 69.7 125 34.4
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 5.6e-10 68.9 104 39.4
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.2e-09 67.8 165 32.7
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.8e-09 66.6 128 38.3
Thecc.01G009000 Theobroma cacao HOM05D001713 ORTHO05D001669 2.8e-09 66.6 87 42.5
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 6.2e-09 65.5 107 36.4
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 8.9e-08 61.6 91 40.7
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.2e-07 61.2 115 34.8
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.2e-07 61.2 124 34.7
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.4e-07 59.7 123 38.2
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 3.4e-07 59.7 114 36.0
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 4.4e-07 59.3 115 31.3
BcaB04g21444 Brassica carinata HOM05D001713 ORTHO05D001669 7.5e-07 58.5 91 41.8
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 9.8e-07 58.2 86 40.7
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.7e-06 57.4 106 33.0
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 2.2e-06 57.0 85 40.0
BcaB02g09091 Brassica carinata HOM05D010480 ORTHO05D003856 6.4e-06 55.5 59 47.5


User provided reference genes

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