Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 0.0e+00 3204.1 1619 100.0
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 0.0e+00 2514.6 1622 80.3
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 0.0e+00 2369.0 1625 75.4
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 0.0e+00 2365.1 1621 76.5
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 0.0e+00 2348.2 1641 75.9
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 0.0e+00 2319.3 1639 75.2
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 0.0e+00 2292.7 1621 74.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 0.0e+00 2273.0 1628 74.4
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 0.0e+00 2268.8 1641 73.8
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 0.0e+00 2267.7 1622 72.9
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 0.0e+00 1989.2 1623 66.0
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 0.0e+00 1622.1 1654 55.2
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 0.0e+00 1416.7 1105 70.3
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 1.1e-277 961.1 1653 39.0
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 3.0e-275 953.0 1739 38.8
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 2.4e-272 943.3 1763 37.9
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 1.1e-269 934.5 1746 37.5
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 2.6e-263 913.3 1570 39.3
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.9e-261 907.1 1734 37.4
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.4e-259 901.0 1737 37.4
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 4.8e-257 892.5 1706 37.3
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.7e-254 884.0 1741 36.8
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 3.8e-254 882.9 1748 36.7
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.9e-253 880.6 1733 37.1
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 4.2e-253 879.4 1737 37.1
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 6.1e-252 875.5 1744 37.0
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.8e-249 866.7 1393 40.1
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 4.8e-249 865.9 1710 37.0
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.4e-248 864.4 1737 36.4
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 4.5e-247 859.4 1752 36.2
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 4.5e-239 832.8 1700 35.2
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.0e-238 831.6 1763 36.0
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 5.0e-238 829.3 1740 36.1
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 5.4e-232 809.3 1763 35.3
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.3e-230 804.7 1724 35.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.8e-230 803.1 1746 34.8
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 6.6e-230 802.4 1755 35.5
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-229 800.8 1764 34.5
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 3.3e-229 800.0 1826 34.2
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.6e-228 797.7 1750 34.7
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.6e-228 797.7 1766 34.4
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 1.0e-227 795.0 1717 34.8
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 6.8e-219 765.8 1698 34.6
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 8.9e-219 765.4 1785 34.1
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.2e-218 765.0 1640 35.1
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.7e-217 761.1 1652 33.4
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.7e-217 761.1 1652 33.4
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 2.2e-217 760.8 1714 34.3
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 2.0e-215 754.2 1760 34.5
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.5e-213 747.3 1767 34.0
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 3.3e-213 746.9 1730 34.2
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 4.3e-213 746.5 1800 34.4
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 2.6e-210 737.3 1715 33.4
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 1.2e-207 728.4 1724 33.6
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 4.3e-205 719.9 1252 38.4
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 7.3e-205 719.2 1768 32.9
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 9.5e-205 718.8 1785 33.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 4.4e-202 709.9 1717 32.8
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.7e-201 708.0 1584 34.1
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 3.8e-201 706.8 1247 37.3
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 3.2e-200 703.7 1312 36.9
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 3.2e-200 703.7 1665 33.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 4.1e-200 703.4 1688 33.2
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 3.3e-197 693.7 1753 32.4
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.6e-196 691.4 1249 36.7
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 2.6e-194 684.1 1607 33.5
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 7.6e-194 682.6 1753 32.6
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 3.9e-190 670.2 1763 32.5
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.1e-188 664.5 1681 32.6
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 2.8e-188 664.1 1645 33.4
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 9.0e-187 659.1 1287 35.7
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.8e-180 637.5 1837 30.4
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 3.8e-177 627.1 1721 32.0
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 4.9e-177 626.7 1750 31.3
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.9e-176 624.8 1646 32.4
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 2.4e-176 624.4 2088 28.8
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 5.5e-176 623.2 1664 32.6
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 9.3e-176 622.5 1861 31.4
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 2.1e-175 621.3 1266 35.0
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.4e-171 608.6 810 44.0
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 2.1e-167 594.7 1701 31.3
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.1e-165 589.0 1698 31.1
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.1e-165 589.0 939 38.2
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 9.7e-165 585.9 667 49.0
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 8.2e-164 582.8 1727 30.1
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 2.2e-161 574.7 1561 32.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.3e-157 560.5 1475 31.9
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 2.2e-145 521.5 1723 29.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.8e-142 511.9 770 39.4
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 7.4e-141 506.5 1759 28.8
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 1.3e-140 505.8 636 45.1
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.8e-140 504.6 1811 28.3
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.1e-135 488.4 665 45.0
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 3.0e-134 484.6 1611 28.2
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.5e-120 439.1 1360 30.7
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 8.9e-110 403.3 1655 27.1
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 5.6e-96 357.5 898 30.5
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-83 316.2 408 42.9
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 1.0e-81 310.1 566 37.3
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 3.4e-77 295.0 1094 28.1
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.5e-72 279.6 655 31.0
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.5e-64 253.1 988 26.2
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 9.0e-62 243.8 591 31.3
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.5e-59 235.7 537 30.7
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 4.3e-56 224.9 408 32.8
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 3.3e-48 198.7 123 78.0
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 8.2e-47 194.1 814 24.4
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 6.5e-44 184.5 636 28.3
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.9e-43 183.0 632 31.5
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 3.1e-38 165.6 758 27.4
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 5.9e-37 161.4 1456 22.3
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.4e-25 123.6 130 46.9
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.4e-22 112.8 744 26.2
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 4.5e-21 108.6 652 21.3
AL3G49900 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 7.2e-19 101.3 62 80.6
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.7e-12 80.1 490 24.9
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 6.5e-12 78.2 137 34.3
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 4.7e-10 72.0 395 27.1
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 6.1e-10 71.6 283 32.5
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 1.4e-09 70.5 59 59.3
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.8e-09 70.1 239 28.5
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 4.0e-09 68.9 289 30.8
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 1.3e-07 63.9 292 27.4
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.4e-06 59.7 80 38.8


User provided reference genes

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