Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 2.1e-141 506.5 466 100.0
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 6.5e-106 388.7 487 84.6
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 5.5e-89 332.4 529 74.1
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 8.0e-88 328.6 224 84.4
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 8.0e-88 328.6 224 84.4
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 1.4e-87 327.8 222 83.8
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 3.0e-87 326.6 222 83.3
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 1.7e-82 310.8 436 73.6
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 2.9e-82 310.1 216 83.3
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 2.0e-78 297.4 223 78.9
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 5.0e-74 282.7 467 73.4
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 3.6e-72 276.6 467 73.2
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 5.6e-65 252.7 222 68.0
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 3.4e-38 163.7 244 49.2
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 2.1e-32 144.4 255 40.8
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 2.8e-32 144.1 227 44.9
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 8.1e-32 142.5 241 41.9
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 3.1e-31 140.6 234 44.0
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 3.1e-31 140.6 235 45.5
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 5.3e-31 139.8 229 42.8
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 4.9e-29 133.3 243 42.4
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 1.9e-28 131.3 232 44.0
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 2.7e-27 127.5 233 41.6
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 3.5e-27 127.1 243 39.1
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 7.9e-27 125.9 262 38.2
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.0e-26 124.0 260 37.3
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 8.7e-26 122.5 241 40.2
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 3.3e-25 120.6 252 37.3
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 1.3e-24 118.6 240 41.7
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 2.1e-24 117.9 255 38.0
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 2.1e-24 117.9 255 36.5
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 2.1e-24 117.9 260 37.3
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 3.7e-24 117.1 250 36.8
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 4.8e-24 116.7 252 36.5
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 8.1e-24 115.9 245 36.7
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 8.1e-24 115.9 263 35.4
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 1.1e-23 115.5 248 38.3
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.1e-23 115.5 248 38.3
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 1.1e-23 115.5 246 37.8
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 1.1e-23 115.5 232 36.2
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.4e-23 114.4 248 37.1
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 3.1e-23 114.0 239 38.5
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 4.0e-23 113.6 235 38.7
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 9.0e-23 112.5 253 34.4
BolC3t14925H Brassica oleracea HOM05D006830 ORTHO05D008119 9.0e-23 112.5 99 69.7
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 9.0e-23 112.5 208 41.3
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 3.4e-22 110.5 234 36.8
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 1.7e-21 108.2 266 35.7
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.2e-21 107.8 233 37.8
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 4.9e-21 106.7 238 36.1
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 6.5e-21 106.3 207 40.1
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 8.4e-21 105.9 217 40.6
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 4.2e-20 103.6 252 34.9
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 5.5e-20 103.2 212 38.7
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 1.6e-19 101.7 264 35.6
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 2.1e-19 101.3 228 37.3
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 6.0e-19 99.8 173 39.9
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 7.9e-19 99.4 261 32.2
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 7.9e-19 99.4 235 35.7
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 7.9e-19 99.4 256 37.1
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 1.0e-18 99.0 179 40.2
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 2.3e-18 97.8 255 34.1
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 3.0e-18 97.4 250 34.8
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 3.9e-18 97.1 211 39.8
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 5.1e-18 96.7 167 41.3
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 5.1e-18 96.7 244 34.8
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 1.9e-17 94.7 250 33.6
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 2.5e-17 94.4 258 33.7
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 2.5e-17 94.4 169 42.0
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 3.3e-17 94.0 185 41.6
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 4.3e-17 93.6 184 40.2
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 2.8e-16 90.9 257 33.1
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 8.2e-16 89.4 267 32.6
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 1.4e-15 88.6 181 38.1
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 2.4e-15 87.8 111 52.3
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 2.4e-15 87.8 259 31.7
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 5.3e-15 86.7 273 32.6
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 5.3e-15 86.7 265 32.1
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 9.0e-15 85.9 265 31.7
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 2.0e-14 84.7 245 33.1
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 3.4e-14 84.0 258 30.2
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 1.0e-13 82.4 258 32.2
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 1.3e-13 82.0 249 32.5
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 2.2e-13 81.3 315 31.1
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 6.5e-13 79.7 177 37.3
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 5.5e-12 76.6 250 31.6
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 5.5e-12 76.6 243 32.5
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 7.2e-12 76.3 199 35.7
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 1.2e-11 75.5 268 30.2
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 3.6e-11 73.9 202 34.2
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 7.9e-11 72.8 297 29.3
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 1.8e-10 71.6 90 48.9
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 3.0e-10 70.9 167 35.3
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 8.7e-10 69.3 159 35.2
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 1.1e-09 68.9 217 32.3
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 1.3e-08 65.5 137 35.8
unitig_22.g6617 Utricularia gibba HOM05D006830 ORTHO05D008119 1.3e-08 65.5 242 29.3
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 2.2e-08 64.7 137 35.8
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 2.6e-06 57.8 87 44.8
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 2.6e-06 57.8 54 61.1
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 4.5e-06 57.0 65 55.4
Os03g0333000 Oryza sativa ssp. japonica HOM05D006830 ORTHO05D008119 7.7e-06 56.2 183 35.0
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 7.7e-06 56.2 39 74.4


User provided reference genes

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