Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 1.6e-36 155.6 82 100.0
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 2.5e-29 131.7 85 85.9
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 1.3e-28 129.4 85 83.5
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 2.8e-28 128.3 85 83.5
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 3.6e-28 127.9 86 84.9
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 4.8e-28 127.5 86 84.9
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.8e-28 127.5 86 84.9
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 4.8e-28 127.5 86 84.9
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 8.1e-28 126.7 85 82.4
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 1.1e-27 126.3 86 83.7
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.4e-27 125.9 86 84.9
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 2.6e-26 121.7 85 80.0
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 1.7e-25 119.0 85 78.8
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 4.2e-24 114.4 70 90.0
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 2.7e-23 111.7 70 88.6
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 7.9e-23 110.2 70 84.3
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 5.6e-21 104.0 84 72.6
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 1.1e-19 99.8 70 80.0
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 7.1e-16 87.0 75 65.3
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 7.1e-16 87.0 71 69.0
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 3.3e-13 78.2 78 57.7
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 7.4e-13 77.0 79 55.7
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 1.3e-12 76.3 78 57.7
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 1.6e-12 75.9 79 53.2
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 1.6e-12 75.9 67 64.2
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 2.1e-12 75.5 71 59.2
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 4.8e-12 74.3 83 51.8
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 8.2e-12 73.6 67 61.2
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 1.1e-11 73.2 87 51.7
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 1.8e-11 72.4 81 50.6
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 2.4e-11 72.0 83 50.6
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 3.1e-11 71.6 71 56.3
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 3.1e-11 71.6 78 52.6
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 3.1e-11 71.6 64 62.5
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.1e-11 71.6 64 62.5
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 5.3e-11 70.9 87 52.9
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 6.9e-11 70.5 73 54.8
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 6.9e-11 70.5 86 50.0
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 9.0e-11 70.1 75 56.0
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 1.2e-10 69.7 66 57.6
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.5e-10 69.3 83 48.2
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.5e-10 69.3 82 50.0
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 2.0e-10 68.9 75 53.3
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 2.6e-10 68.6 72 52.8
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 2.6e-10 68.6 67 58.2
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 3.4e-10 68.2 76 52.6
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 4.5e-10 67.8 68 55.9
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 5.8e-10 67.4 69 56.5
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 7.6e-10 67.0 64 56.2
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 1.0e-09 66.6 74 52.7
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 1.0e-09 66.6 68 55.9
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 1.0e-09 66.6 68 55.9
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 1.3e-09 66.2 42 81.0
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.3e-09 66.2 66 56.1
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.9e-09 65.1 78 51.3
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 5.0e-09 64.3 55 63.6
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 6.5e-09 63.9 74 54.1
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 6.5e-09 63.9 67 53.7
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 8.4e-09 63.5 91 47.3
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-08 63.2 112 38.4
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-08 63.2 112 38.4
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.1e-08 63.2 82 47.6
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 1.4e-08 62.8 56 62.5
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 1.9e-08 62.4 71 47.9
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 2.5e-08 62.0 69 50.7
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.2e-08 61.6 73 52.1
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 5.5e-08 60.8 67 49.3
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 7.1e-08 60.5 68 50.0
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 9.3e-08 60.1 83 45.8
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 1.2e-07 59.7 83 44.6
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.6e-07 59.3 64 51.6
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 1.6e-07 59.3 56 60.7
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.5e-07 58.2 76 44.7
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 1.8e-06 55.8 67 47.8
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 1.8e-06 55.8 45 64.4
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 2.3e-06 55.5 73 46.6
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 5.1e-06 54.3 77 42.9


User provided reference genes

Program Settings