Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 2.4e-37 158.3 79 100.0
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 2.4e-37 158.3 79 100.0
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 2.4e-37 158.3 79 100.0
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 2.4e-37 158.3 79 100.0
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 9.2e-37 156.4 79 98.7
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 9.2e-37 156.4 79 98.7
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 9.2e-37 156.4 79 98.7
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 1.2e-36 156.0 79 97.5
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.2e-36 156.0 79 97.5
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.2e-36 156.0 79 97.5
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 4.6e-36 154.1 79 96.2
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 4.6e-36 154.1 79 96.2
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 7.8e-36 153.3 79 93.7
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.0e-35 152.9 79 96.2
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 2.3e-35 151.8 79 94.9
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 2.3e-35 151.8 79 94.9
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 6.2e-33 143.7 79 91.1
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 4.4e-31 137.5 79 83.5
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 5.8e-31 137.1 79 83.5
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 7.6e-31 136.7 79 82.3
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 9.9e-31 136.3 79 79.7
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.9e-30 134.8 79 82.3
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 3.8e-30 134.4 79 82.3
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 8.4e-30 133.3 79 81.0
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.1e-29 132.9 79 81.0
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.1e-29 132.9 79 83.5
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.9e-29 132.1 79 78.5
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.9e-29 132.1 79 82.3
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 5.4e-29 130.6 79 81.0
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 1.2e-28 129.4 79 75.9
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 6.0e-28 127.1 80 78.8
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 1.3e-27 125.9 79 73.4
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.3e-27 125.9 79 74.7
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.3e-27 125.9 79 81.0
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 2.3e-27 125.2 79 79.7
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.9e-27 124.4 79 79.7
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 3.9e-27 124.4 80 77.5
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 5.1e-27 124.0 79 74.7
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 6.6e-27 123.6 80 77.5
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 6.6e-27 123.6 80 77.5
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 6.6e-27 123.6 79 75.9
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.1e-26 122.9 79 75.9
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.3e-26 120.9 79 75.9
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.3e-26 120.9 79 75.9
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 5.6e-26 120.6 79 82.3
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 5.6e-26 120.6 79 69.6
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 5.6e-26 120.6 75 77.3
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.2e-25 119.4 79 72.2
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 3.6e-25 117.9 78 73.1
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 1.8e-24 115.5 79 70.9
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 1.8e-24 115.5 79 69.6
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 4.0e-24 114.4 79 72.2
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 5.2e-24 114.0 77 74.0
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 4.4e-23 110.9 84 67.9
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 5.8e-23 110.5 79 67.1
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 7.6e-23 110.2 79 68.4
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 9.9e-23 109.8 79 69.6
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.3e-22 109.4 78 69.2
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.7e-22 109.0 79 69.6
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.7e-22 109.0 79 70.9
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.7e-22 109.0 79 64.6
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 2.9e-22 108.2 79 63.3
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 3.8e-22 107.8 79 68.4
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 3.8e-22 107.8 79 68.4
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 3.8e-22 107.8 79 68.4
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 4.9e-22 107.5 79 67.1
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 4.9e-22 107.5 79 68.4
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 4.9e-22 107.5 79 68.4
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 4.9e-22 107.5 79 68.4
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.4e-22 107.1 79 68.4
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 6.4e-22 107.1 79 68.4
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 6.4e-22 107.1 79 63.3
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 6.4e-22 107.1 79 68.4
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 6.4e-22 107.1 79 67.1
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 6.4e-22 107.1 79 63.3
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 8.4e-22 106.7 79 68.4
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 8.4e-22 106.7 79 68.4
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 8.4e-22 106.7 79 67.1
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 63.3
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 67.1
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 67.1
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 64.6
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 65.8
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 65.8
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 2.4e-21 105.1 79 62.0
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 2.4e-21 105.1 79 65.8
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 3.2e-21 104.8 79 68.4
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 3.2e-21 104.8 79 65.8
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.2e-21 104.8 79 67.1
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.2e-21 104.4 78 61.5
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 4.2e-21 104.4 79 67.1
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 67.1
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 64.6
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 65.8
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 64.6
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 64.6
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 65.8
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 64.6
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 64.6
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 64.6
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 65.8
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 64.6
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 65.8
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 65.8
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 63.3
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 63.3
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.2e-20 102.8 79 63.3
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.6e-20 102.4 79 64.6
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 65.8
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 63.3
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 63.3
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 64.6
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 60.8
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 64.6
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 63.3
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 64.6
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 63.3
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 64.6
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 3.5e-20 101.3 78 64.1
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 62.0
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 62.0
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 64.6
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 4.6e-20 100.9 79 62.0
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 4.6e-20 100.9 75 65.3
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 4.6e-20 100.9 75 65.3
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 64.6
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 60.8
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 63.3
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 62.0
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 1.0e-19 99.8 75 68.0
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 63.3
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 62.0
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 62.0
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 3.0e-19 98.2 78 60.3
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 62.0
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 63.3
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 63.3
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 60.8
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 62.0
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 59.5
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 62.0
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 5.1e-19 97.4 63 79.4
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 6.6e-19 97.1 77 62.3
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.1e-18 96.3 79 64.6
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.1e-18 96.3 75 60.0
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.1e-18 96.3 79 62.0
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.5e-18 95.9 79 58.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.9e-18 95.5 78 57.7
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.5e-18 95.1 79 62.0
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.5e-18 95.1 79 59.5
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.5e-18 95.1 79 59.5
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 3.3e-18 94.7 79 58.2
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 4.3e-18 94.4 79 57.0
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 7.3e-18 93.6 79 60.8
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 9.6e-18 93.2 79 58.2
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 8.1e-17 90.1 74 60.8
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 4.0e-16 87.8 79 53.2
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 4.0e-16 87.8 63 63.5
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 6.9e-16 87.0 48 83.3
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 1.2e-15 86.3 76 55.3
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.7e-14 82.4 79 53.2
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 2.2e-14 82.0 55 72.7
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.9e-14 81.6 73 61.6
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.4e-13 79.3 79 53.2
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 7.1e-13 77.0 57 63.2
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 9.3e-13 76.6 65 60.0
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 3.3e-10 68.2 52 59.6
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.6e-09 65.9 70 45.7
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 4.8e-09 64.3 50 56.0
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.4e-08 62.0 29 100.0
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 4.0e-08 61.2 79 43.0
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.2e-07 59.7 74 45.9
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.5e-07 59.3 35 71.4
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 1.5e-07 59.3 80 43.8
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.0e-07 58.9 42 66.7
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 2.6e-07 58.5 80 41.2
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 9.9e-07 56.6 40 67.5


User provided reference genes

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