Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.7e-250 869.0 487 100.0
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 7.8e-195 684.1 487 79.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.0e-178 630.6 486 75.5
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.9e-177 626.3 486 75.7
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.2e-171 607.1 486 75.3
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 3.4e-166 589.0 491 75.4
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.4e-164 583.6 488 74.2
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.3e-162 576.2 489 73.0
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-147 527.3 411 72.7
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 5.2e-146 521.9 420 71.0
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 9.7e-145 517.7 419 69.5
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.4e-143 513.1 420 70.2
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.6e-142 509.6 419 68.7
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 4.5e-142 508.8 420 70.2
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 6.1e-139 498.4 493 63.7
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.0e-123 444.9 486 59.1
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.6e-109 398.3 473 52.9
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.4e-103 380.9 506 49.6
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.2e-102 377.9 462 54.8
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 6.0e-102 375.6 517 49.3
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.2e-99 367.9 450 51.3
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.7e-99 365.9 517 48.2
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.3e-98 363.6 512 48.2
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.3e-96 355.1 515 47.2
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.1e-94 350.5 505 47.5
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.9e-93 346.3 510 47.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 6.6e-93 345.5 509 47.3
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 8.6e-93 345.1 502 48.4
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 5.6e-92 342.4 502 45.2
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 2.8e-91 340.1 430 51.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.1e-90 338.2 502 46.0
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 2.0e-89 334.0 448 49.3
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.9e-88 330.1 508 44.3
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.9e-88 329.3 511 46.4
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.2e-87 326.6 513 45.6
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.6e-86 322.8 512 44.3
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 3.9e-85 319.7 446 49.3
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.1e-85 319.3 505 46.1
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.1e-84 318.2 510 46.5
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.1e-84 318.2 511 44.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.3e-84 316.6 447 51.0
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 5.6e-84 315.8 468 47.6
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.8e-83 313.5 449 48.1
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.6e-83 313.2 451 50.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.0e-82 309.7 511 44.4
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 3.4e-81 306.6 487 46.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 3.2e-79 300.1 510 43.9
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.1e-78 297.4 515 41.7
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.6e-78 296.2 517 42.9
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.3e-77 294.7 527 41.6
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.7e-77 294.3 515 39.2
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.7e-77 294.3 499 43.9
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.1e-76 291.6 503 44.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.5e-76 290.4 513 39.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 4.0e-74 283.1 496 38.7
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 2.6e-73 280.4 506 39.1
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.6e-73 278.9 502 40.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.9e-72 276.9 480 43.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-71 275.0 452 41.8
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.9e-71 274.2 509 38.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.6e-70 269.6 504 39.1
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 4.6e-70 269.6 527 41.2
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.3e-69 268.1 518 40.9
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.8e-69 267.7 497 38.4
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.0e-69 266.9 497 37.2
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 3.9e-69 266.5 410 47.1
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.9e-69 266.5 497 40.4
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.1e-69 266.2 495 39.2
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 6.7e-69 265.8 520 40.6
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.7e-69 265.4 527 40.2
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.5e-68 264.6 507 38.3
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-68 264.6 497 39.4
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.9e-68 264.2 493 41.0
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.5e-68 263.8 523 40.7
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.3e-68 263.5 513 38.4
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 4.3e-68 263.1 461 42.7
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 5.6e-68 262.7 362 45.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.3e-67 261.5 517 40.8
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.1e-67 260.8 512 39.8
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.4e-66 258.1 507 40.8
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.0e-66 256.5 526 39.0
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 4.0e-66 256.5 499 38.3
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 5.3e-66 256.1 508 39.8
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.5e-65 254.6 505 39.4
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.6e-65 252.3 526 39.5
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 7.6e-65 252.3 513 39.4
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.8e-64 250.0 501 36.5
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.9e-64 249.6 496 38.5
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.2e-63 246.9 444 42.6
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.6e-62 244.6 524 37.8
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.1e-62 244.2 513 38.2
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.7e-62 243.8 530 40.6
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.6e-62 243.0 513 38.6
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 4.6e-62 243.0 501 36.9
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.3e-61 241.5 487 41.5
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 2.3e-61 240.7 504 38.7
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 8.7e-61 238.8 503 39.2
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.5e-60 238.0 496 37.9
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.9e-60 237.7 503 37.4
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.1e-59 234.2 504 37.9
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.8e-59 233.8 526 37.6
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.1e-58 231.9 513 35.9
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.1e-58 230.3 530 36.8
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 4.5e-57 226.5 530 37.0
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.0e-56 225.3 475 40.0
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.9e-56 223.0 502 36.9
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.4e-55 221.5 526 37.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 2.5e-55 220.7 524 35.7
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 5.5e-55 219.5 476 37.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 3.5e-54 216.9 531 36.0
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.0e-53 215.3 480 38.5
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.9e-52 211.1 453 38.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 5.7e-52 209.5 470 39.1
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.4e-52 209.1 409 37.4
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 9.7e-52 208.8 492 35.4
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 3.7e-51 206.8 406 37.4
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 7.6e-49 199.1 424 36.3
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 8.5e-48 195.7 512 34.0
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.9e-47 194.5 450 38.0
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 5.5e-47 193.0 417 36.5
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.1e-45 186.4 444 36.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-43 181.8 489 36.2
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.7e-43 181.4 450 37.3
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.3e-42 176.4 488 34.2
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.0e-40 172.2 489 33.1
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 8.5e-40 169.1 533 31.9
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.1e-38 162.9 497 33.8
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.7e-37 159.5 344 35.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.6e-36 157.5 485 30.7
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 2.8e-35 154.1 441 34.9
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.4e-34 151.8 232 42.7
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.0e-33 147.9 355 33.5
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.7e-30 137.5 360 34.7
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 8.0e-30 136.0 335 34.9
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.4e-29 135.2 421 30.6
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 6.7e-29 132.9 421 30.4
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 6.7e-29 132.9 456 31.1
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.1e-28 132.1 217 41.5
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.4e-28 130.2 384 32.0
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 5.7e-28 129.8 421 29.9
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.7e-27 128.3 517 28.2
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.8e-27 127.5 114 58.8
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.3e-26 123.2 168 43.5
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 6.5e-24 116.3 140 46.4
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 3.2e-23 114.0 400 28.5
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 3.2e-23 114.0 503 29.0
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-22 111.3 114 62.3
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.7e-22 110.9 481 26.6
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.0e-21 109.0 163 44.2
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 5.2e-21 106.7 211 37.0
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.0e-20 104.8 523 27.0
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 2.6e-20 104.4 145 45.5
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 2.6e-20 104.4 327 30.3
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 9.7e-20 102.4 285 32.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.7e-16 91.7 46 97.8
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.5e-12 78.6 58 62.1
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 2.0e-12 78.2 280 30.7
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.6e-12 77.8 59 62.7
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 9.8e-12 75.9 196 32.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.8e-10 71.6 182 29.1
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.7e-09 67.8 387 23.8
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 3.5e-09 67.4 165 34.5
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 1.0e-08 65.9 173 31.2
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 6.5e-08 63.2 95 37.9
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.6e-08 62.8 237 27.8
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.5e-07 62.0 113 31.9
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.9e-07 61.6 103 34.0
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-06 58.2 180 26.1
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.6e-06 57.4 284 24.3


User provided reference genes

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