Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.4e-288 993.8 465 100.0
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 3.4e-256 887.9 465 87.7
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 9.9e-256 886.3 465 87.5
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 1.3e-252 875.9 463 87.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 6.7e-252 873.6 442 91.2
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 8.7e-252 873.2 464 86.9
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 8.7e-252 873.2 464 86.9
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 8.1e-250 866.7 470 85.7
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 7.6e-248 860.1 463 86.0
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 1.7e-247 859.0 490 81.6
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 6.4e-247 857.1 486 82.7
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 1.4e-246 855.9 489 82.2
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 2.4e-241 838.6 462 83.1
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 3.8e-207 724.9 461 71.1
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 1.2e-192 676.8 350 87.4
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 4.6e-184 648.3 459 62.7
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 3.3e-182 642.1 460 62.0
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.5e-179 633.3 459 61.9
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.2e-176 623.6 462 59.5
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 2.8e-173 612.5 461 58.8
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 2.8e-173 612.5 457 60.0
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 3.6e-173 612.1 459 59.9
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 3.1e-172 609.0 462 58.9
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 4.0e-172 608.6 464 58.8
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 4.0e-172 608.6 462 58.7
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 6.8e-172 607.8 459 58.4
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 1.5e-171 606.7 460 60.0
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 3.4e-171 605.5 463 59.0
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.9e-169 599.7 460 60.0
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 4.6e-168 595.1 460 56.5
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.7e-167 593.2 460 58.5
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 2.3e-167 592.8 459 59.0
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 3.0e-167 592.4 457 59.3
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 3.0e-167 592.4 461 57.9
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 5.1e-167 591.7 459 58.4
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 6.6e-167 591.3 465 57.8
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 5.6e-166 588.2 455 58.2
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 5.6e-166 588.2 460 58.3
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 7.3e-166 587.8 460 57.4
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 7.3e-166 587.8 461 57.5
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 1.6e-165 586.6 460 57.6
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 4.7e-165 585.1 447 59.1
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 8.1e-165 584.3 460 57.8
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 2.3e-164 582.8 460 57.6
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 4.0e-164 582.0 466 56.2
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 1.2e-163 580.5 477 54.9
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 2.6e-163 579.3 497 55.3
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 2.6e-163 579.3 442 59.5
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 7.6e-163 577.8 461 56.8
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.7e-162 575.5 473 56.7
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.9e-162 575.1 470 56.2
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.9e-161 573.2 467 55.2
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 3.2e-161 572.4 473 56.0
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 5.4e-161 571.6 456 56.6
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 3.9e-159 565.5 462 54.8
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 5.1e-159 565.1 434 57.6
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.1e-156 557.4 463 55.7
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 2.0e-155 553.1 492 52.6
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 2.6e-155 552.7 462 54.5
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.7e-151 540.0 469 54.6
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 3.1e-148 529.3 420 58.3
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.3e-141 507.3 442 53.6
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 1.3e-141 507.3 407 56.0
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 2.8e-141 506.1 395 57.2
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.4e-140 503.8 352 63.4
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 3.2e-137 492.7 417 53.5
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 5.5e-137 491.9 345 62.0
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 1.3e-135 487.3 467 49.0
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 8.7e-135 484.6 508 47.4
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 5.6e-134 481.9 515 46.6
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 9.0e-132 474.6 377 56.2
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.2e-131 474.2 578 42.7
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 4.5e-131 472.2 460 49.6
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 1.2e-128 464.2 444 48.9
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 2.1e-128 463.4 261 82.0
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 2.1e-128 463.4 555 42.3
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 3.9e-127 459.1 345 59.7
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 5.5e-121 438.7 388 51.0
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 7.2e-121 438.3 400 51.8
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 2.1e-120 436.8 377 54.4
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 6.1e-120 435.3 554 42.4
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 3.3e-118 429.5 371 55.3
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 3.4e-115 419.5 396 49.5
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 3.7e-109 399.4 338 53.6
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 4.8e-109 399.1 455 46.4
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 5.3e-108 395.6 466 45.9
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 5.9e-107 392.1 376 48.7
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 1.6e-99 367.5 412 42.7
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 3.6e-88 329.7 417 42.2
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 1.8e-84 317.4 455 39.1
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.0e-82 311.6 197 66.0
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 1.5e-81 307.8 240 59.2
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 2.1e-80 303.9 302 49.0
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 2.0e-75 287.3 206 62.6
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 2.7e-75 287.0 496 35.7
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 1.7e-74 284.3 218 58.3
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 5.0e-74 282.7 168 70.2
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 8.6e-74 282.0 258 50.4
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 1.6e-72 277.7 263 49.8
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.9e-65 254.2 306 41.8
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 5.6e-65 252.7 221 54.8
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 4.4e-62 243.0 229 54.1
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 1.7e-61 241.1 509 32.0
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 2.4e-60 237.3 158 63.3
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 2.0e-59 234.2 158 62.7
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.3e-58 230.7 426 32.4
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 6.2e-56 222.6 150 72.7
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 6.6e-42 176.0 306 33.7
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 1.5e-38 164.9 234 38.9
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 2.3e-34 151.0 247 33.2
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 5.1e-34 149.8 247 33.2
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 5.1e-34 149.8 89 70.8
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 3.3e-33 147.1 179 41.3
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 3.3e-33 147.1 78 76.9
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 3.1e-31 140.6 385 27.8
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 1.8e-26 124.8 106 64.2
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 1.6e-24 118.2 68 67.6
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 6.9e-23 112.8 88 50.0
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 4.5e-22 110.2 102 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.9e-20 104.8 211 30.8
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.9e-20 104.8 73 61.6
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 3.2e-20 104.0 108 43.5
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 1.8e-18 98.2 76 55.3
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 3.0e-18 97.4 223 27.8
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 1.4e-15 88.6 108 41.7
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 1.8e-15 88.2 54 74.1
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 4.0e-15 87.0 124 37.1
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 6.9e-15 86.3 96 43.8
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 4.5e-14 83.6 67 49.3
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 4.2e-12 77.0 83 47.0
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 5.5e-12 76.6 40 77.5
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 6.0e-11 73.2 94 42.6


User provided reference genes

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