Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.6e-106 388.3 195 100.0
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 5.2e-89 331.3 193 85.0
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.4e-86 322.4 195 82.6
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.4e-86 322.4 195 82.6
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.4e-86 322.4 195 82.6
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 2.9e-84 315.5 195 80.5
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.2e-83 312.0 195 80.5
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.2e-83 312.0 195 80.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 7.2e-83 310.8 195 81.5
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.1e-82 307.8 195 80.5
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.2e-80 303.5 195 78.5
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.3e-76 289.3 196 73.5
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.8e-71 272.3 196 73.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.9e-63 245.0 201 65.2
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.2e-61 240.4 203 61.6
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.2e-61 240.4 203 64.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.7e-61 239.2 200 65.0
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.5e-61 238.8 203 60.6
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 5.0e-60 235.0 202 61.9
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 2.8e-58 229.2 197 62.4
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 2.8e-58 229.2 197 62.4
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.8e-57 226.5 197 61.9
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 4.0e-57 225.3 197 59.9
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.0e-57 225.3 202 61.9
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.6e-56 222.6 202 57.9
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 7.5e-56 221.1 197 59.9
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 7.5e-56 221.1 197 59.9
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.7e-55 219.9 201 55.2
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 6.4e-55 218.0 204 57.4
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.6e-53 213.4 200 56.0
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-53 213.0 203 55.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-53 213.0 203 55.7
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 2.7e-53 212.6 204 54.9
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-52 210.7 206 54.4
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.7e-52 209.9 204 55.4
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-52 209.9 203 55.2
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 5.0e-52 208.4 205 53.7
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 6.6e-52 208.0 216 51.4
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.6e-52 208.0 203 54.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.1e-51 207.2 200 52.5
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 2.5e-51 206.1 199 52.8
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.5e-51 206.1 206 54.4
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 2.5e-51 206.1 210 53.8
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.5e-51 206.1 204 53.4
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.3e-51 205.7 203 54.2
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 5.6e-51 204.9 199 54.3
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 5.6e-51 204.9 197 52.8
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.2e-50 203.8 207 52.2
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.6e-50 203.4 201 51.7
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.8e-50 202.6 200 53.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.8e-50 202.6 204 54.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.2e-50 201.4 204 53.9
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.3e-49 199.5 204 53.9
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.2e-48 197.2 207 50.2
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.4e-48 195.3 201 51.7
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.4e-48 195.3 201 51.7
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 5.8e-48 194.9 186 52.2
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 7.5e-48 194.5 204 51.5
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 7.5e-48 194.5 199 49.7
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 7.5e-48 194.5 200 50.5
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 2.9e-47 192.6 202 51.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 3.7e-47 192.2 207 51.7
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 4.9e-47 191.8 206 50.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.9e-46 189.9 196 52.6
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.2e-45 187.2 205 49.8
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 6.0e-45 184.9 208 51.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.3e-44 183.7 199 50.3
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.3e-44 183.0 201 52.2
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 2.3e-44 183.0 202 53.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.0e-44 182.6 197 52.3
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 3.0e-44 182.6 206 49.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.1e-44 181.8 202 50.0
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.5e-43 180.3 199 51.8
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.9e-43 179.9 195 49.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.5e-43 179.5 205 49.3
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 3.3e-43 179.1 199 52.8
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 3.3e-43 179.1 199 52.8
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 3.3e-43 179.1 201 49.3
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 3.3e-43 179.1 196 50.5
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 3.3e-43 179.1 196 50.5
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 5.6e-43 178.3 200 46.5
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 9.5e-43 177.6 203 49.3
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.2e-42 177.2 153 58.8
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.1e-42 176.4 203 50.7
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.8e-42 176.0 197 53.3
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 3.6e-42 175.6 197 51.3
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 8.1e-42 174.5 198 49.5
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 8.1e-42 174.5 201 46.8
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.8e-41 173.3 206 47.1
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.4e-41 172.9 209 47.8
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.4e-41 172.9 204 48.5
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.4e-41 172.9 198 46.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 4.0e-41 172.2 204 50.0
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 4.0e-41 172.2 203 47.8
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.2e-41 171.8 202 48.5
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 6.8e-41 171.4 203 48.3
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 6.8e-41 171.4 207 49.3
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.0e-40 169.9 202 50.5
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.0e-40 169.9 202 50.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.4e-40 169.1 207 46.9
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 9.9e-40 167.5 199 48.2
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 9.9e-40 167.5 204 47.5
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.3e-39 167.2 199 49.2
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.3e-39 167.2 218 45.9
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.7e-39 166.8 197 47.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.7e-39 166.8 202 47.5
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.2e-39 166.4 212 48.1
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.2e-39 166.4 200 48.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.9e-39 166.0 207 46.4
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.1e-38 164.1 203 45.3
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.1e-38 164.1 206 48.5
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.9e-38 163.3 214 46.3
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.1e-38 162.2 197 46.7
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 4.1e-38 162.2 198 45.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 7.1e-38 161.4 160 51.9
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 9.2e-38 161.0 194 45.9
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.2e-37 160.6 202 46.5
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.1e-37 159.8 209 43.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.5e-37 159.1 270 38.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 4.6e-37 158.7 192 46.4
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 7.8e-37 157.9 260 38.8
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.0e-36 157.5 180 48.9
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.3e-36 157.1 206 44.7
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 6.6e-36 154.8 205 44.4
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.9e-35 153.3 203 44.8
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.9e-35 153.3 220 41.4
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.9e-35 153.3 198 43.4
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.6e-35 151.8 197 44.2
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 5.6e-35 151.8 195 46.2
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 9.6e-35 151.0 205 44.9
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 2.1e-34 149.8 215 43.3
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 6.2e-34 148.3 200 47.0
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-33 147.1 97 78.4
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.4e-33 147.1 97 78.4
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.0e-33 145.6 114 61.4
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.2e-32 144.1 106 67.9
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 2.0e-32 143.3 97 77.3
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 2.0e-32 143.3 97 77.3
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 8.4e-31 137.9 200 40.5
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.9e-30 136.7 330 32.1
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.4e-30 136.3 88 71.6
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 4.2e-30 135.6 201 41.3
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 4.2e-30 135.6 199 38.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.2e-29 134.0 203 41.4
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.9e-27 126.7 127 50.4
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.3e-27 125.9 218 38.1
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.6e-27 125.2 187 42.8
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.6e-26 123.6 218 37.2
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.5e-24 117.1 88 62.5
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 5.8e-24 115.2 74 79.7
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.3e-23 114.0 169 43.2
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.3e-23 114.0 88 58.0
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.7e-23 113.6 176 41.5
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.7e-23 113.6 102 55.9
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 8.4e-23 111.3 200 35.0
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.7e-21 106.3 154 44.2
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.5e-21 105.9 121 52.1
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.9e-20 102.4 155 40.0
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 6.7e-20 101.7 161 41.0
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 9.6e-19 97.8 153 40.5
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.1e-18 96.7 138 44.2
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 5.3e-17 92.0 158 43.7
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.0e-16 90.1 160 41.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.2e-13 80.9 73 56.2
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.7e-13 79.7 44 81.8
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 5.1e-12 75.5 89 46.1
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.1e-11 74.3 47 68.1
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.9e-11 73.6 195 33.8
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 3.3e-11 72.8 40 77.5
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.3e-11 72.8 44 68.2
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.3e-11 72.8 44 68.2
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.1e-09 66.2 95 40.0
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.0e-08 63.5 122 36.1
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 4.5e-08 62.4 84 41.7


User provided reference genes

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