Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.4e-261 904.4 450 100.0
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 5.5e-243 844.0 448 94.2
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.2e-242 842.8 450 93.8
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 4.8e-239 830.9 452 92.5
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 4.5e-237 824.3 452 92.7
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 7.6e-237 823.5 480 87.3
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 6.5e-236 820.5 475 88.2
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.9e-235 818.9 479 88.1
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 2.1e-234 815.5 450 92.0
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 5.5e-227 790.8 413 95.2
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.3e-223 779.6 451 87.4
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.3e-212 743.0 386 94.8
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.6e-202 709.5 476 76.9
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.2e-181 640.2 454 73.6
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 2.3e-180 636.0 425 76.2
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 3.0e-180 635.6 433 74.1
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 6.6e-180 634.4 451 74.1
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 1.5e-179 633.3 425 75.5
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 3.3e-179 632.1 440 74.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 7.3e-179 630.9 452 72.3
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 9.5e-179 630.6 423 75.7
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 2.1e-178 629.4 425 75.5
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 4.7e-178 628.2 414 75.4
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.1e-177 627.1 410 77.1
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.4e-177 626.7 393 78.9
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.8e-177 626.3 451 72.1
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.1e-177 625.5 392 80.1
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.5e-176 623.2 435 72.2
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.5e-176 623.2 460 70.9
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 3.4e-176 622.1 441 74.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 3.4e-176 622.1 447 72.7
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 4.4e-176 621.7 441 72.6
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 7.5e-176 620.9 396 78.3
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 9.8e-176 620.5 413 76.3
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 2.9e-175 619.0 393 77.6
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 2.9e-175 619.0 437 71.4
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 2.9e-175 619.0 393 78.9
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 3.7e-175 618.6 429 72.7
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 8.3e-175 617.5 393 77.4
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 8.3e-175 617.5 416 75.2
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.4e-174 616.7 393 76.8
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 2.4e-174 615.9 393 77.1
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 2.4e-174 615.9 447 72.3
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 5.4e-174 614.8 469 69.1
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 5.4e-174 614.8 444 70.9
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 7.0e-174 614.4 416 75.2
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 7.0e-174 614.4 401 78.1
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.2e-173 613.6 421 72.9
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 1.6e-173 613.2 386 78.0
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.3e-172 610.1 449 70.8
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 3.0e-172 609.0 386 78.0
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 6.6e-172 607.8 394 76.6
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 7.3e-171 604.4 434 71.4
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.3e-167 593.6 393 75.8
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 3.2e-166 589.0 482 64.9
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 4.1e-166 588.6 381 77.7
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 2.7e-165 585.9 438 71.0
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 7.8e-165 584.3 399 74.4
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 3.9e-164 582.0 479 63.9
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 5.1e-164 581.6 372 76.3
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.9e-163 579.7 431 70.1
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 1.6e-162 576.6 392 75.5
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 3.6e-162 575.5 400 72.5
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 4.7e-162 575.1 394 73.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.2e-159 566.2 354 79.9
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.2e-157 560.5 380 75.3
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 9.6e-155 550.8 530 57.7
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.8e-153 546.6 439 68.1
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 1.8e-153 546.6 405 69.4
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.6e-152 542.7 431 66.1
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 8.4e-151 537.7 428 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 2.1e-149 533.1 401 65.8
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 4.6e-149 531.9 351 77.5
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 6.0e-149 531.6 402 69.2
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.5e-144 516.9 403 65.8
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.0e-144 516.5 445 62.7
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 1.1e-142 510.8 401 65.6
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 1.4e-142 510.4 385 65.2
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 5.4e-142 508.4 385 69.4
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 3.0e-140 502.7 434 62.9
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 1.1e-139 500.7 418 65.1
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 3.3e-139 499.2 418 64.6
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.1e-137 494.2 391 67.3
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 9.0e-137 491.1 411 65.2
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 1.3e-135 487.3 293 83.3
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.9e-135 486.1 411 64.7
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 2.7e-133 479.6 450 59.1
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.5e-133 479.2 357 70.9
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 8.2e-130 468.0 403 62.8
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 2.2e-127 459.9 367 67.3
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 4.1e-121 439.1 360 66.9
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.5e-115 420.6 400 54.8
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 7.7e-112 408.3 394 54.6
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 1.9e-110 403.7 276 75.0
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 9.7e-107 391.3 457 48.8
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 3.2e-102 376.3 257 75.1
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.1e-101 373.6 257 75.1
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 7.5e-91 338.6 247 73.3
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.6e-83 313.5 243 70.8
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 6.3e-82 308.9 234 72.2
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 7.0e-81 305.4 251 70.5
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 7.0e-81 305.4 251 70.5
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 7.0e-81 305.4 251 70.5
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 1.9e-78 297.4 204 71.1
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 2.6e-75 287.0 254 68.1
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 4.9e-74 282.7 222 70.7
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 5.0e-71 272.7 172 80.2
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 8.6e-71 271.9 530 36.8
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.5e-70 268.5 185 70.8
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.8e-68 264.2 185 69.2
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 2.0e-67 260.8 186 69.4
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 9.8e-67 258.5 155 83.2
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.6e-64 251.1 331 46.2
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 1.3e-63 248.1 155 78.1
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.0e-63 246.9 161 77.0
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 5.0e-63 246.1 152 78.9
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 2.9e-58 230.3 237 53.6
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 8.6e-55 218.8 158 69.0
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.0e-48 196.1 162 62.3
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.0e-44 183.3 132 72.0
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 2.2e-42 177.6 130 66.9
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 8.4e-42 175.6 113 80.5
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 4.8e-37 159.8 100 85.0
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 6.2e-37 159.5 100 85.0
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.6e-35 154.1 116 70.7
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.3e-34 151.8 119 65.5
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 3.8e-34 150.2 92 77.2
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 5.1e-31 139.8 144 50.7
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.4e-28 131.0 74 78.4
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 7.1e-25 119.4 121 55.4
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 1.0e-23 115.5 73 76.7
CARHR128200 Cardamine hirsuta HOM05D005057 ORTHO05D006570 3.3e-22 110.5 65 89.2
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 8.1e-21 105.9 86 59.3
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 6.9e-20 102.8 62 75.8
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 4.9e-18 96.7 73 67.1
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 2.1e-16 91.3 161 37.3
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 2.1e-16 91.3 182 38.5
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 5.7e-14 83.2 57 70.2
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 7.4e-14 82.8 132 41.7


User provided reference genes

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