Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.1e-139 500.0 250 100.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.7e-132 476.1 253 94.9
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.1e-131 471.9 250 94.8
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 7.0e-131 470.7 250 94.8
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 2.0e-130 469.2 250 94.0
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 3.8e-129 464.9 250 92.8
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 3.8e-129 464.9 250 92.8
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.5e-128 463.0 250 93.2
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 6.1e-127 457.6 249 92.0
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.0e-126 456.8 255 91.0
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.0e-126 456.8 255 91.0
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 4.4e-125 451.4 258 89.1
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 5.7e-125 451.1 251 91.2
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 9.8e-125 450.3 250 92.0
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.4e-123 445.7 250 90.8
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.4e-123 445.7 250 90.8
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 3.1e-123 445.3 249 89.6
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.8e-118 429.5 250 84.8
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.7e-108 396.4 256 78.9
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 7.8e-98 360.9 247 71.7
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 2.8e-95 352.4 240 71.2
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-94 350.5 222 82.9
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 8.9e-94 347.4 252 67.5
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.3e-92 343.6 242 68.6
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.7e-92 343.2 246 67.9
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 6.4e-92 341.3 246 68.7
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 8.4e-92 340.9 236 71.6
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.1e-91 340.5 244 70.5
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 5.4e-91 338.2 246 68.7
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.2e-90 337.0 240 69.2
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.6e-90 336.7 251 64.9
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.1e-90 336.3 248 67.3
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 2.1e-90 336.3 225 70.7
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 2.7e-90 335.9 211 74.4
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.7e-90 335.9 248 67.7
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 4.6e-90 335.1 204 74.0
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.3e-89 333.6 248 66.5
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.3e-89 333.6 247 66.8
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 3.0e-89 332.4 246 65.4
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 3.9e-89 332.0 249 66.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 5.1e-89 331.6 205 74.1
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 8.6e-89 330.9 218 70.6
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 2.5e-88 329.3 247 65.2
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.5e-88 329.3 205 73.7
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.5e-88 329.3 205 73.7
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.3e-88 328.9 206 73.3
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 3.3e-88 328.9 247 66.8
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 7.3e-88 327.8 247 65.6
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 9.6e-88 327.4 247 65.2
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 9.6e-88 327.4 254 63.8
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.2e-87 327.0 249 64.3
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-87 327.0 249 64.3
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.2e-87 327.0 250 64.0
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.6e-87 326.6 247 65.2
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.6e-87 326.6 247 65.2
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.6e-87 326.6 247 65.2
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.6e-87 326.6 211 71.6
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.6e-87 326.6 202 73.8
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 2.1e-87 326.2 253 62.1
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 2.1e-87 326.2 249 65.5
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.8e-87 325.9 230 67.4
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.8e-87 325.9 240 64.6
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.8e-87 325.9 222 73.4
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 3.6e-87 325.5 247 66.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.6e-87 325.5 249 63.9
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.7e-87 325.1 202 73.3
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 6.2e-87 324.7 240 67.5
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 8.1e-87 324.3 248 63.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 8.1e-87 324.3 202 73.8
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.1e-86 323.9 234 68.4
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.4e-86 323.6 247 64.4
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.8e-86 323.2 202 73.8
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 2.4e-86 322.8 202 74.8
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.4e-86 322.8 247 64.8
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 3.1e-86 322.4 200 73.5
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 4.0e-86 322.0 247 63.2
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 8.9e-86 320.9 247 62.8
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.5e-85 320.1 231 68.4
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.5e-85 320.1 248 65.3
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.6e-85 319.3 248 63.7
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 2.6e-85 319.3 232 67.2
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 5.8e-85 318.2 247 64.0
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 7.6e-85 317.8 244 62.3
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 9.9e-85 317.4 244 62.3
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 1.3e-84 317.0 213 68.1
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.2e-84 316.2 202 71.8
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.9e-84 315.8 243 63.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.8e-84 315.5 250 64.0
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.9e-84 315.1 249 62.7
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 4.9e-84 315.1 250 62.4
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 6.4e-84 314.7 232 65.5
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.4e-83 312.8 254 63.4
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 3.2e-83 312.4 204 69.6
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 7.1e-83 311.2 208 68.8
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.6e-82 310.1 235 65.1
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 8.7e-81 304.3 240 62.5
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.9e-80 303.1 209 67.0
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.6e-80 301.6 264 61.4
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 7.3e-80 301.2 215 66.0
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 3.6e-79 298.9 243 60.5
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 4.8e-79 298.5 230 60.4
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.0e-78 295.4 297 52.2
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 2.9e-76 289.3 172 76.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.4e-75 286.2 245 62.4
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 9.3e-75 284.3 251 54.6
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.0e-73 280.8 312 47.4
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 8.7e-73 277.7 204 63.2
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 2.5e-72 276.2 248 58.9
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 1.9e-67 260.0 158 77.2
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 1.5e-61 240.4 154 79.2
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 3.4e-61 239.2 319 45.5
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.9e-60 236.1 136 79.4
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 1.6e-58 230.3 169 72.2
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.1e-58 229.9 282 47.2
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 2.5e-56 223.0 191 51.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.6e-55 220.3 221 50.2
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.4e-54 216.5 210 47.1
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 2.2e-52 209.9 200 54.0
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 9.3e-51 204.5 146 62.3
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 4.6e-50 202.2 119 79.0
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.1e-46 189.5 190 43.7
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 9.4e-43 177.9 106 76.4
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 3.9e-41 172.6 99 82.8
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 8.8e-41 171.4 99 81.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.5e-40 170.6 243 40.7
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 9.1e-38 161.4 145 59.3
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 3.4e-37 159.5 186 52.2
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.3e-36 157.5 99 71.7
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 2.9e-36 156.4 144 54.2
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.9e-35 153.7 97 73.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 5.5e-35 152.1 87 83.9
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.1e-30 137.9 69 98.6
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.4e-30 137.5 89 80.9
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.4e-30 137.5 92 79.3
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.4e-30 137.5 144 49.3
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 4.1e-30 136.0 72 94.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 4.1e-30 136.0 72 94.4
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 5.3e-30 135.6 88 80.7
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.0e-29 133.7 84 69.0
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 5.2e-25 119.0 101 52.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 3.3e-24 116.3 203 32.5
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 7.0e-22 108.6 118 51.7
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 5.0e-20 102.4 102 52.9
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.0e-16 90.5 44 100.0
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.0e-16 90.5 44 100.0
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 4.8e-15 85.9 82 54.9
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 4.8e-15 85.9 176 27.8
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 3.5e-13 79.7 48 77.1
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 4.5e-13 79.3 82 48.8
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 5.9e-13 79.0 117 28.2
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.7e-12 77.4 55 72.7
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 8.6e-12 75.1 56 71.4
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.2e-11 73.2 35 100.0
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 3.2e-11 73.2 35 100.0
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 3.2e-11 73.2 90 46.7
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 1.6e-10 70.9 35 97.1
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 4.0e-09 66.2 42 71.4
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.2e-09 65.9 54 51.9
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 5.7e-08 62.4 45 62.2
BcaC03g15720 Brassica carinata HOM05D000589 ORTHO05D039119 1.4e-06 57.8 34 79.4
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 7.0e-06 55.5 101 35.6


User provided reference genes

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