Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 1.1e-83 313.2 148 100.0
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 2.8e-79 298.5 148 93.2
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 6.3e-79 297.4 148 93.2
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 8.2e-79 297.0 148 92.6
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 2.4e-78 295.4 148 92.6
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 5.7e-72 274.2 148 88.5
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.7e-68 262.7 148 83.1
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 2.5e-67 258.8 148 83.1
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 9.4e-67 256.9 148 81.1
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.8e-65 252.7 148 80.4
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 5.2e-65 251.1 148 81.1
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 2.4e-54 215.7 153 67.3
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 5.3e-54 214.5 151 66.9
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 3.5e-53 211.8 151 66.9
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 5.9e-53 211.1 151 66.2
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 1.3e-52 209.9 152 66.4
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.7e-52 209.5 154 66.2
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.2e-52 209.1 152 65.1
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 6.5e-52 207.6 151 64.2
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 8.5e-52 207.2 150 64.0
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.5e-51 206.5 152 65.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 1.5e-51 206.5 150 64.7
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 1.9e-51 206.1 149 65.1
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 9.4e-51 203.8 151 61.6
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 1.6e-50 203.0 152 61.8
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 2.1e-50 202.6 148 68.9
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 2.1e-50 202.6 144 62.5
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 2.1e-50 202.6 146 65.1
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 2.7e-50 202.2 151 63.6
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 3.6e-50 201.8 147 63.3
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.7e-50 201.4 151 60.9
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 6.1e-50 201.1 151 62.9
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 6.1e-50 201.1 149 61.7
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 6.1e-50 201.1 154 61.0
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 8.0e-50 200.7 144 63.2
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.3e-49 199.1 148 61.5
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 2.3e-49 199.1 151 62.9
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 4.0e-49 198.4 144 62.5
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 4.0e-49 198.4 148 64.2
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 5.2e-49 198.0 145 62.1
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 6.8e-49 197.6 148 62.8
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 5.7e-48 194.5 152 60.5
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 5.7e-48 194.5 152 59.9
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 7.5e-48 194.1 151 59.6
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.3e-47 193.4 147 63.9
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 2.2e-47 192.6 144 59.7
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 3.7e-47 191.8 145 60.7
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 1.4e-46 189.9 144 59.7
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 1.8e-46 189.5 147 59.9
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 4.1e-46 188.3 147 59.2
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 4.1e-46 188.3 146 59.6
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 5.4e-46 188.0 151 61.6
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 5.4e-46 188.0 143 60.1
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 7.0e-46 187.6 147 58.5
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 7.0e-46 187.6 145 62.8
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.2e-45 186.8 148 57.4
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.2e-45 186.8 148 57.4
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.6e-45 186.4 147 58.5
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 5.9e-45 184.5 145 59.3
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.3e-44 182.6 148 58.1
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 3.8e-44 181.8 145 58.6
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 8.6e-44 180.6 150 59.3
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.5e-43 179.9 150 58.7
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 1.5e-43 179.9 150 58.7
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.6e-42 176.4 148 57.4
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 2.3e-41 172.6 151 59.6
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 2.0e-40 169.5 147 54.4
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 2.6e-40 169.1 118 65.3
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 2.8e-39 165.6 155 54.2
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 8.3e-39 164.1 150 53.3
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 8.3e-39 164.1 147 52.4
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 1.2e-37 160.2 155 53.5
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.6e-37 159.8 148 52.7
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 7.8e-37 157.5 121 63.6
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 9.5e-35 150.6 118 61.0
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 4.7e-34 148.3 128 57.8
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.7e-34 148.3 114 57.9
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 2.3e-33 146.0 156 48.1
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 4.7e-26 121.7 135 41.5
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 4.4e-24 115.2 102 52.9
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 6.4e-23 111.3 56 91.1
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 3.9e-20 102.1 148 39.2
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 5.1e-20 101.7 145 39.3
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 4.7e-18 95.1 93 51.6
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 7.8e-13 77.8 68 55.9
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 7.3e-11 71.2 60 56.7


User provided reference genes

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