Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 0.0e+00 1318.5 689 100.0
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 0.0e+00 1204.1 691 89.6
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 0.0e+00 1173.7 700 88.0
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 0.0e+00 1153.7 690 87.2
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1152.9 692 87.9
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1143.3 690 86.5
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1141.7 691 86.5
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1139.8 692 86.8
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 0.0e+00 1137.9 700 85.7
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 0.0e+00 1123.6 696 83.6
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 0.0e+00 1122.5 703 83.8
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 4.7e-312 1074.3 691 82.9
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 9.4e-312 1072.8 691 82.8
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.7e-310 1068.1 687 80.5
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.0e-309 1066.2 690 82.3
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 5.1e-309 1063.9 690 81.7
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.7e-299 1032.3 698 80.1
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.5e-284 982.6 692 73.0
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 4.1e-282 974.5 673 78.9
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 5.9e-281 970.7 692 72.1
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.0e-236 822.8 690 62.0
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 5.8e-236 821.2 668 71.6
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 5.8e-236 821.2 691 61.4
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.8e-235 818.5 691 63.1
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 4.2e-234 815.1 691 61.2
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.6e-233 813.1 694 61.0
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.7e-232 809.7 648 64.0
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.5e-231 806.6 691 63.0
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 3.3e-231 805.4 690 60.0
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-230 803.5 498 83.3
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.1e-230 802.7 691 59.9
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.3e-227 793.5 696 60.1
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.3e-227 793.5 673 60.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 3.2e-226 788.9 694 59.5
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 3.0e-224 782.3 691 58.8
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 2.5e-223 779.2 697 60.1
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 8.1e-222 774.2 677 61.7
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 5.3e-221 771.5 692 58.7
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 4.5e-220 768.5 690 58.3
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 3.4e-212 742.3 694 57.5
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.5e-212 741.9 694 57.5
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.3e-211 740.3 697 58.4
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.4e-210 736.9 789 51.7
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 2.1e-209 733.0 684 56.7
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.1e-207 727.2 697 56.7
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.5e-207 726.9 622 60.1
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 4.3e-207 725.3 674 57.1
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 4.8e-206 721.8 683 55.3
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.8e-205 719.9 702 57.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 5.3e-205 718.4 690 55.2
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.0e-204 716.5 753 53.0
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.9e-203 712.6 683 57.4
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 3.8e-203 712.2 673 55.0
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 5.0e-203 711.8 680 55.9
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 8.5e-203 711.1 654 57.0
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 8.5e-203 711.1 671 55.6
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.6e-201 706.8 650 58.6
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 6.7e-200 701.4 619 57.4
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.7e-198 696.8 676 56.7
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.7e-198 695.7 686 52.0
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 6.3e-198 694.9 678 53.8
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 1.8e-197 693.3 686 54.2
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 5.3e-197 691.8 691 54.1
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 9.1e-197 691.0 676 53.3
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 7.7e-196 688.0 730 51.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.2e-195 686.4 682 55.9
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 5.0e-195 685.3 668 52.7
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.4e-194 683.7 723 51.2
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.2e-194 682.2 746 50.7
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.2e-194 682.2 723 51.0
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 7.2e-194 681.4 686 53.2
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.2e-193 680.6 624 57.7
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.2e-193 680.6 756 50.5
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.2e-193 680.6 672 54.8
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.2e-192 675.2 756 50.1
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 3.3e-191 672.5 755 51.0
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 7.4e-191 671.4 631 54.4
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.7e-190 670.2 700 54.0
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.8e-189 666.8 673 54.7
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 2.4e-189 666.4 661 52.6
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 3.1e-189 666.0 696 51.9
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 3.5e-188 662.5 675 51.6
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 5.9e-188 661.8 642 55.0
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 7.7e-188 661.4 696 50.4
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 1.0e-187 661.0 717 51.0
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 8.5e-187 657.9 683 54.6
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 8.5e-187 657.9 560 62.7
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.9e-186 656.8 691 51.5
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.9e-186 656.8 699 49.9
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.5e-186 656.4 652 54.1
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.5e-186 656.4 700 50.6
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 5.5e-186 655.2 646 52.0
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.1e-185 653.3 661 54.2
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 6.1e-185 651.7 676 51.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 6.1e-185 651.7 693 50.5
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.8e-184 650.2 672 51.9
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.8e-184 650.2 647 53.8
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 5.2e-184 648.7 693 50.4
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 6.7e-184 648.3 693 50.6
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.5e-183 647.1 684 51.3
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 3.3e-183 646.0 671 52.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.5e-183 644.8 692 52.3
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.2e-179 633.3 669 50.4
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 5.0e-179 632.1 627 55.3
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 5.2e-176 622.1 644 51.7
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.7e-175 618.6 642 53.3
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.1e-173 614.4 582 58.2
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.8e-173 613.6 680 49.7
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 9.1e-173 611.3 649 51.2
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.7e-172 609.8 692 50.9
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 7.7e-172 608.2 613 52.5
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.7e-171 607.1 659 51.1
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 6.5e-171 605.1 687 48.0
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 9.5e-170 601.3 639 51.2
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 4.0e-168 595.9 650 49.2
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 6.8e-168 595.1 634 49.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.7e-167 592.0 669 49.8
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 8.3e-166 588.2 655 47.8
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 9.2e-165 584.7 611 52.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.6e-164 583.9 670 47.9
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 3.8e-163 579.3 668 49.1
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.2e-161 574.3 629 50.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.6e-161 573.9 589 52.3
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.4e-160 570.9 681 46.5
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.7e-158 563.9 663 49.6
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.4e-157 560.8 685 48.3
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 2.0e-156 557.0 651 46.2
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 7.3e-154 548.5 486 57.2
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 5.8e-151 538.9 647 46.5
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 4.6e-148 529.3 690 44.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.4e-143 513.1 494 54.0
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 7.5e-143 511.9 465 57.8
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.2e-142 510.4 699 46.2
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.1e-140 503.8 421 63.2
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.3e-126 458.0 499 49.5
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 3.4e-119 433.3 751 37.8
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.9e-118 429.5 403 55.8
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.5e-114 417.9 661 38.6
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.6e-114 416.0 672 37.4
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 6.2e-113 412.5 648 39.8
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 7.6e-111 405.6 689 36.4
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 7.1e-109 399.1 660 38.0
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 6.9e-104 382.5 645 37.7
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.9e-101 374.4 750 36.0
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 5.5e-101 372.9 632 38.0
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.3e-96 356.3 664 36.3
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.5e-95 354.8 765 34.0
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 2.3e-91 340.9 686 37.3
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 8.2e-89 332.4 804 31.7
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 7.7e-87 325.9 629 36.4
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 5.0e-86 323.2 538 39.4
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 3.6e-84 317.0 505 39.2
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.1e-82 312.0 368 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 3.4e-79 300.4 746 31.6
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 9.4e-77 292.4 331 49.8
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.8e-75 288.1 514 36.6
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 3.7e-73 280.4 215 66.5
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.8e-73 280.0 495 36.0
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.4e-72 278.5 221 62.4
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.2e-58 232.3 334 39.8
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.0e-30 137.9 108 64.8
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.3e-29 134.0 279 33.7
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 4.3e-29 134.0 69 88.4
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.1e-28 131.7 116 56.0
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 7.8e-23 113.2 192 35.4
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 6.8e-19 100.1 66 72.7
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.4e-17 93.2 109 47.7
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.8e-12 78.2 150 35.3
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 4.7e-12 77.4 152 35.5
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 2.0e-10 72.0 49 71.4
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 9.9e-10 69.7 60 55.0
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 8.4e-09 66.6 54 63.0
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 1.2e-07 62.8 52 59.6
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.6e-07 62.4 54 51.9


User provided reference genes

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