Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g15130 Schrenkiella parvula HOM05D003912 ORTHO05D004409 3.8e-128 461.5 224 100.0
Carub.0004s1415 Capsella rubella HOM05D003912 ORTHO05D004409 7.9e-41 171.4 174 52.3
Aa31LG1G19870 Aethionema arabicum HOM05D003912 ORTHO05D004409 3.9e-40 169.1 184 51.6
Sp1g03710 Schrenkiella parvula HOM05D003912 ORTHO05D004409 1.5e-39 167.2 183 51.9
AL4G28230 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 4.3e-39 165.6 170 51.2
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 1.3e-38 164.1 163 52.8
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 1.3e-38 164.1 182 51.1
BcaB03g13468 Brassica carinata HOM05D003912 ORTHO05D004409 2.1e-38 163.3 175 52.0
CARHR004250 Cardamine hirsuta HOM05D003912 ORTHO05D004409 3.6e-38 162.5 183 51.9
Carub.0001s0410 Capsella rubella HOM05D003912 ORTHO05D004409 3.1e-37 159.5 183 50.3
Aa31LG5G4440 Aethionema arabicum HOM05D003912 ORTHO05D004409 6.9e-37 158.3 182 48.4
A05p12820 Brassica napus HOM05D003912 ORTHO05D004409 2.0e-36 156.8 108 75.0
BraA05t20221Z Brassica rapa HOM05D003912 ORTHO05D004409 2.0e-36 156.8 108 75.0
BolC8t46959H Brassica oleracea HOM05D003912 ORTHO05D004409 3.4e-36 156.0 184 47.8
Thhalv10006716m.g Eutrema salsugineum HOM05D003912 ORTHO05D004409 3.4e-36 156.0 183 48.6
THA.LOC104826119 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 5.8e-36 155.2 182 49.5
AT1G04860 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 7.6e-36 154.8 183 48.6
BolC4t23225H Brassica oleracea HOM05D003912 ORTHO05D004409 2.2e-35 153.3 163 54.0
AL1G14580 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 4.9e-35 152.1 184 47.3
A08p36670 Brassica napus HOM05D003912 ORTHO05D004409 8.4e-35 151.4 184 47.3
C04p16750 Brassica napus HOM05D003912 ORTHO05D004409 8.4e-35 151.4 165 50.9
BraA08t35570Z Brassica rapa HOM05D003912 ORTHO05D004409 8.4e-35 151.4 184 47.3
C08p01540 Brassica napus HOM05D003912 ORTHO05D004409 4.2e-34 149.1 180 48.9
BcaC07g36874 Brassica carinata HOM05D003912 ORTHO05D004409 1.2e-33 147.5 180 47.8
BcaB01g00970 Brassica carinata HOM05D003912 ORTHO05D004409 6.0e-33 145.2 99 74.7
A09p67710 Brassica napus HOM05D003912 ORTHO05D004409 3.7e-30 136.0 185 45.9
BcaC07g42157 Brassica carinata HOM05D003912 ORTHO05D004409 1.8e-29 133.7 171 43.9
BraA09t42101Z Brassica rapa HOM05D003912 ORTHO05D004409 1.8e-29 133.7 187 43.3
CARHR126680 Cardamine hirsuta HOM05D003912 ORTHO05D004409 3.1e-29 132.9 173 44.5
C08p52040 Brassica napus HOM05D003912 ORTHO05D004409 4.0e-29 132.5 174 42.5
Manes.03G147300 Manihot esculenta HOM05D003912 ORTHO05D004409 2.2e-27 126.7 174 42.5
BolC8t52736H Brassica oleracea HOM05D003912 ORTHO05D004409 4.9e-27 125.6 174 41.4
CsaV3_3G010910 Cucumis sativus L. HOM05D003912 ORTHO05D004409 3.2e-26 122.9 182 39.0
Sed0005652 Sechium edule HOM05D003912 ORTHO05D004409 5.5e-26 122.1 182 38.5
ClCG05G003290 Citrullus lanatus HOM05D003912 ORTHO05D004409 9.3e-26 121.3 182 37.9
TAR362G1186 Trochodendron aralioides HOM05D003912 ORTHO05D004409 1.6e-25 120.6 182 39.0
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 2.7e-25 119.8 175 41.1
MELO3C006310.2 Cucumis melo HOM05D003912 ORTHO05D004409 4.6e-25 119.0 182 37.9
Thecc.04G203100 Theobroma cacao HOM05D003912 ORTHO05D004409 1.8e-24 117.1 175 38.9
Nn3g20024 Nelumbo nucifera HOM05D003912 ORTHO05D004409 5.1e-24 115.5 180 36.1
RcHm_v2.0_Chr4g0415171 Rosa chinensis HOM05D003912 ORTHO05D004409 5.1e-24 115.5 174 39.1
Ciclev10004226m.g Citrus clementina HOM05D003912 ORTHO05D004409 1.1e-23 114.4 176 40.3
Atru.chr4.1691 Acer truncatum HOM05D003912 ORTHO05D004409 1.9e-23 113.6 176 39.2
TWI09G1517 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 2.5e-23 113.2 172 39.0
Dinv27232 Davidia involucrata HOM05D003912 ORTHO05D004409 4.3e-23 112.5 173 38.2
Potri.001G315600 Populus trichocarpa HOM05D003912 ORTHO05D004409 4.3e-23 112.5 174 39.1
Sabra16G0199600 Salix brachista HOM05D003912 ORTHO05D004409 4.3e-23 112.5 174 39.1
Gohir.D02G124000 Gossypium hirsutum HOM05D003912 ORTHO05D004409 5.7e-23 112.1 175 36.0
Gorai.005G130100 Gossypium raimondii HOM05D003912 ORTHO05D004409 5.7e-23 112.1 175 36.0
TWI09G0574 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 5.7e-23 112.1 172 38.4
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 7.4e-23 111.7 174 40.2
Gohir.A03G094600 Gossypium hirsutum HOM05D003912 ORTHO05D004409 9.6e-23 111.3 175 36.0
TAR633G1099 Trochodendron aralioides HOM05D003912 ORTHO05D004409 9.6e-23 111.3 182 35.7
Prupe.1G008700 Prunus persica HOM05D003912 ORTHO05D004409 1.3e-22 110.9 174 37.9
FvH4_4g16490 Fragaria vesca HOM05D003912 ORTHO05D004409 1.6e-22 110.5 174 36.8
FAN12G1567 Fragaria x ananassa HOM05D003912 ORTHO05D004409 1.6e-22 110.5 174 36.8
FAN22G2235 Fragaria x ananassa HOM05D003912 ORTHO05D004409 2.1e-22 110.2 174 36.8
MD04G1009400 Malus domestica HOM05D003912 ORTHO05D004409 2.1e-22 110.2 174 39.1
Nn1g07894 Nelumbo nucifera HOM05D003912 ORTHO05D004409 2.1e-22 110.2 185 35.1
PGR083G0566 Punica granatum HOM05D003912 ORTHO05D004409 2.1e-22 110.2 186 36.6
Sed0023360 Sechium edule HOM05D003912 ORTHO05D004409 2.1e-22 110.2 174 35.6
Hund18994 Selenicereus undatus HOM05D003912 ORTHO05D004409 2.1e-22 110.2 95 57.9
FAN17G2369 Fragaria x ananassa HOM05D003912 ORTHO05D004409 3.7e-22 109.4 174 36.8
Hma1.2p1_0187F.1_g082300 Hydrangea macrophylla HOM05D003912 ORTHO05D004409 4.8e-22 109.0 182 37.4
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 4.8e-22 109.0 182 37.9
AUR62018591 Chenopodium quinoa HOM05D003912 ORTHO05D004409 6.3e-22 108.6 174 36.2
HanXRQChr01g0022461 Helianthus annuus HOM05D003912 ORTHO05D004409 6.3e-22 108.6 172 37.2
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 6.3e-22 108.6 182 37.9
Sabra17G0049300 Salix brachista HOM05D003912 ORTHO05D004409 6.3e-22 108.6 182 37.9
TAR636G0234 Trochodendron aralioides HOM05D003912 ORTHO05D004409 6.3e-22 108.6 182 37.4
vmacro15538 Vaccinium macrocarpon HOM05D003912 ORTHO05D004409 6.3e-22 108.6 176 38.6
AUR62020827 Chenopodium quinoa HOM05D003912 ORTHO05D004409 1.1e-21 107.8 174 36.2
TWI73G0783 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 1.4e-21 107.5 172 37.2
Lj6C552G3 Lonicera japonica HOM05D003912 ORTHO05D004409 1.8e-21 107.1 173 37.6
Eucgr.H02776 Eucalyptus grandis HOM05D003912 ORTHO05D004409 2.4e-21 106.7 183 37.2
FAN07G1879 Fragaria x ananassa HOM05D003912 ORTHO05D004409 2.4e-21 106.7 174 36.2
QL06p025007 Quercus lobata HOM05D003912 ORTHO05D004409 3.1e-21 106.3 174 37.4
arahy.Tifrunner.gnm1.ann1.2BAE9R Arachis hypogaea HOM05D003912 ORTHO05D004409 4.1e-21 105.9 173 37.0
arahy.Tifrunner.gnm1.ann1.1SB5R1 Arachis hypogaea HOM05D003912 ORTHO05D004409 5.3e-21 105.5 173 37.0
COL.COLO4_20146 Corchorus olitorius HOM05D003912 ORTHO05D004409 5.3e-21 105.5 84 61.9
Rhsim02G0058800 Rhododendron simsii HOM05D003912 ORTHO05D004409 5.3e-21 105.5 174 37.9
Nitab4.5_0006297g0020 Nicotiana tabacum HOM05D003912 ORTHO05D004409 9.0e-21 104.8 174 36.8
EL10Ac2g03910 Beta vulgaris HOM05D003912 ORTHO05D004409 1.2e-20 104.4 293 30.7
BcaC07g42158 Brassica carinata HOM05D003912 ORTHO05D004409 1.2e-20 104.4 81 67.9
CiPaw.01G120700 Carya illinoinensis HOM05D003912 ORTHO05D004409 1.5e-20 104.0 174 36.2
Nitab4.5_0007416g0010 Nicotiana tabacum HOM05D003912 ORTHO05D004409 1.5e-20 104.0 174 36.8
Haze_11613 Corylus avellana HOM05D003912 ORTHO05D004409 2.0e-20 103.6 90 58.9
MD13G1284700 Malus domestica HOM05D003912 ORTHO05D004409 7.6e-20 101.7 174 37.9
PSO675G6815 Papaver somniferum HOM05D003912 ORTHO05D004409 1.0e-19 101.3 182 34.1
Peaxi162Scf00047g00430 Petunia axillaris HOM05D003912 ORTHO05D004409 1.0e-19 101.3 174 32.2
CSS0014108 Camellia sinensis var. sinensis HOM05D003912 ORTHO05D004409 1.3e-19 100.9 174 37.4
Cc03_g07890 Coffea canephora HOM05D003912 ORTHO05D004409 1.3e-19 100.9 174 36.2
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 1.3e-19 100.9 90 57.8
Solyc09g091930.3 Solanum lycopersicum HOM05D003912 ORTHO05D004409 1.3e-19 100.9 171 33.9
Sopen09g034830 Solanum pennellii HOM05D003912 ORTHO05D004409 1.3e-19 100.9 171 33.9
Sc19g0007170 Simmondsia chinensis HOM05D003912 ORTHO05D004409 2.2e-19 100.1 174 36.2
CAN.G1635.11 Capsicum annuum HOM05D003912 ORTHO05D004409 5.0e-19 99.0 171 35.1
Peaxi162Scf00423g00315 Petunia axillaris HOM05D003912 ORTHO05D004409 6.5e-19 98.6 174 34.5
Lsat_1_v5_gn_1_72160 Lactuca sativa HOM05D003912 ORTHO05D004409 1.4e-18 97.4 167 35.3
Glyma.18G000500 Glycine max HOM05D003912 ORTHO05D004409 2.5e-18 96.7 175 33.1
Lj6g0024996 Lotus japonicus HOM05D003912 ORTHO05D004409 3.2e-18 96.3 90 54.4
PGSC0003DMG401015759 Solanum tuberosum HOM05D003912 ORTHO05D004409 3.2e-18 96.3 174 35.1
TPR.G19333 Trifolium pratense HOM05D003912 ORTHO05D004409 3.2e-18 96.3 174 33.9
CAN.G765.21 Capsicum annuum HOM05D003912 ORTHO05D004409 4.2e-18 95.9 182 34.1
DCAR_026615 Daucus carota HOM05D003912 ORTHO05D004409 4.2e-18 95.9 170 36.5
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 4.2e-18 95.9 99 51.5
ECA233G4597 Erigeron canadensis HOM05D003912 ORTHO05D004409 5.5e-18 95.5 180 31.1
Hma1.2p1_1407F.1_g281410 Hydrangea macrophylla HOM05D003912 ORTHO05D004409 5.5e-18 95.5 117 42.7
Nitab4.5_0003502g0040 Nicotiana tabacum HOM05D003912 ORTHO05D004409 5.5e-18 95.5 174 32.8
Pp3c19_20640 Physcomitrium patens HOM05D003912 ORTHO05D004409 5.5e-18 95.5 179 35.2
TAR365G1117 Trochodendron aralioides HOM05D003912 ORTHO05D004409 5.5e-18 95.5 90 56.7
GSVIVG01021053001 Vitis vinifera HOM05D003912 ORTHO05D004409 5.5e-18 95.5 92 53.3
PSO541G1554 Papaver somniferum HOM05D003912 ORTHO05D004409 7.2e-18 95.1 83 60.2
Atru.chr4.1690 Acer truncatum HOM05D003912 ORTHO05D004409 1.6e-17 94.0 90 53.3
Migut.G00711 Erythranthe guttata HOM05D003912 ORTHO05D004409 1.6e-17 94.0 84 56.0
PGSC0003DMG400031289 Solanum tuberosum HOM05D003912 ORTHO05D004409 2.1e-17 93.6 78 48.7
Actinidia27226 Actinidia chinensis HOM05D003912 ORTHO05D004409 2.7e-17 93.2 92 53.3
Phvul.001G268800 Phaseolus vulgaris HOM05D003912 ORTHO05D004409 2.7e-17 93.2 98 53.1
Aqoxy2G03850 Aquilegia oxysepala HOM05D003912 ORTHO05D004409 3.6e-17 92.8 195 30.3
unitig_747.g21697 Utricularia gibba HOM05D003912 ORTHO05D004409 3.6e-17 92.8 90 53.3
MSTRG.4227 Avicennia marina HOM05D003912 ORTHO05D004409 6.1e-17 92.0 98 52.0
Psat5g101840 Pisum sativum HOM05D003912 ORTHO05D004409 6.1e-17 92.0 92 52.2
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 7.9e-17 91.7 174 31.0
ATR0609G080 Amborella trichopoda HOM05D003912 ORTHO05D004409 1.0e-16 91.3 80 56.2
Lsat_1_v5_gn_6_60801 Lactuca sativa HOM05D003912 ORTHO05D004409 1.3e-16 90.9 183 30.6
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 1.8e-16 90.5 84 56.0
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 2.3e-16 90.1 173 32.9
Ca_16382_v3 Cicer arietinum L. HOM05D003912 ORTHO05D004409 3.0e-16 89.7 84 54.8
Sopen05g032180 Solanum pennellii HOM05D003912 ORTHO05D004409 3.0e-16 89.7 72 51.4
SalBow3G1138 Salvia bowleyana HOM05D003912 ORTHO05D004409 3.9e-16 89.4 90 53.3
SGA_v2.0_scaffold626G53246 Striga asiatica HOM05D003912 ORTHO05D004409 3.9e-16 89.4 92 52.2
Hma1.2p1_0383F.1_g140280 Hydrangea macrophylla HOM05D003912 ORTHO05D004409 5.1e-16 89.0 69 59.4
Lalb_Chr08g0230331 Lupinus albus HOM05D003912 ORTHO05D004409 1.9e-15 87.0 84 54.8
Solyc05g053690.2 Solanum lycopersicum HOM05D003912 ORTHO05D004409 2.5e-15 86.7 72 50.0
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 4.3e-15 85.9 74 55.4
SEGI_06521 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 9.7e-15 84.7 78 52.6
ECA248G0878 Erigeron canadensis HOM05D003912 ORTHO05D004409 1.3e-14 84.3 108 47.2
Pp3c18_14990 Physcomitrium patens HOM05D003912 ORTHO05D004409 1.3e-14 84.3 91 52.7
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 1.6e-14 84.0 90 48.9
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 2.2e-14 83.6 75 54.7
Pp3c22_11200 Physcomitrium patens HOM05D003912 ORTHO05D004409 2.8e-14 83.2 74 56.8
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 6.3e-14 82.0 78 50.0
SMO244G0088 Selaginella moellendorffii HOM05D000344 ORTHO05D004409 1.1e-13 81.3 73 50.7
CDE06G1403 Ceratophyllum demersum HOM05D003912 ORTHO05D004409 6.9e-13 78.6 69 55.1
SEGI_19895 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 2.6e-12 76.6 81 48.1
Migut.N00208 Erythranthe guttata HOM05D003912 ORTHO05D004409 4.5e-12 75.9 95 45.3
Mapoly0123s0038 Marchantia polymorpha HOM05D003912 ORTHO05D004409 1.7e-11 73.9 88 44.3
CBR_g38465 Chara braunii HOM05D003912 ORTHO05D004409 3.2e-10 69.7 71 47.9
Actinidia11416 Actinidia chinensis HOM05D003912 ORTHO05D004409 2.7e-09 66.6 143 34.3
Os08g0527900 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 3.6e-09 66.2 91 40.7
SEGI_11917 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 1.0e-08 64.7 53 60.4
Cpa.g.c36900.1 Carica papaya HOM05D003912 ORTHO05D004409 1.8e-08 63.9 140 35.7
Os08g0527100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 6.7e-08 62.0 83 38.6
Zm00001eb175050 Zea mays HOM05D003912 ORTHO05D004409 1.1e-07 61.2 171 28.1
SEGI_00366 Sequoiadendron giganteum HOM05D000344 ORTHO05D000934 7.4e-07 58.5 103 40.8
Os08g0528000 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 2.8e-06 56.6 80 41.2
Os08g0528100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 2.8e-06 56.6 64 45.3
Os11g0619500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 6.3e-06 55.5 78 37.2


User provided reference genes

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