Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.8e-193 679.1 353 100.0
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 5.9e-176 620.9 351 91.2
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 3.8e-175 618.2 354 92.4
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 6.5e-175 617.5 352 91.2
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.9e-174 615.9 355 91.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 7.2e-174 614.0 354 91.2
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 2.7e-173 612.1 351 91.5
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 8.0e-173 610.5 353 90.1
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.8e-172 609.4 354 91.2
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.3e-172 609.0 354 91.2
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.2e-171 606.7 353 90.1
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.3e-170 603.2 353 89.8
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.3e-167 593.2 377 84.6
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 8.3e-162 573.9 392 78.3
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 6.1e-157 557.8 354 85.3
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 3.6e-149 531.9 310 89.0
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 9.8e-147 523.9 354 76.6
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 5.4e-145 518.1 292 91.1
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.7e-122 443.4 290 84.5
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 3.5e-120 435.6 355 65.9
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 3.5e-120 435.6 337 67.1
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.3e-119 433.7 340 66.5
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 5.3e-116 421.8 335 65.7
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.9e-116 421.4 357 62.7
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 4.5e-115 418.7 354 62.1
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 4.9e-114 415.2 353 62.6
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.9e-113 413.3 341 62.8
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.9e-113 413.3 349 62.5
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.9e-113 413.3 338 63.9
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.2e-113 412.5 357 61.6
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 9.3e-113 411.0 339 63.7
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 4.6e-112 408.7 338 63.6
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.0e-112 408.3 355 62.3
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 6.0e-112 408.3 353 61.2
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.0e-111 407.5 349 61.3
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.3e-111 407.1 350 61.1
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 2.3e-111 406.4 357 61.9
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 3.0e-111 406.0 375 58.9
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 3.9e-111 405.6 354 62.1
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.7e-111 404.8 357 61.6
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.1e-110 404.1 353 59.8
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.5e-110 403.7 363 60.1
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 4.3e-110 402.1 346 61.6
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.1e-109 399.8 377 58.9
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 6.2e-109 398.3 357 60.5
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.1e-108 397.5 351 59.5
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.8e-108 396.7 351 60.1
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 3.1e-108 396.0 348 60.9
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 5.3e-108 395.2 357 59.4
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.5e-107 393.7 366 58.7
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 4.5e-107 392.1 341 60.4
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 5.8e-107 391.7 358 58.9
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.8e-106 389.0 341 58.4
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 3.2e-105 386.0 351 57.3
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.2e-104 384.0 339 61.9
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 2.7e-104 382.9 355 58.3
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.3e-103 380.6 355 58.9
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 1.3e-103 380.6 340 60.6
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 3.0e-103 379.4 373 56.0
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 6.7e-103 378.3 338 59.5
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 2.5e-102 376.3 355 56.1
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 2.1e-101 373.2 352 58.2
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 2.8e-101 372.9 340 59.1
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.8e-101 372.9 357 57.4
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.8e-101 372.9 355 56.1
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 4.8e-101 372.1 343 57.1
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.4e-100 370.5 340 58.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.8e-100 370.2 341 58.9
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 3.1e-100 369.4 344 56.7
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 5.3e-100 368.6 340 58.2
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 6.9e-100 368.2 292 65.1
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 6.9e-100 368.2 339 56.3
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 6.9e-100 368.2 350 55.7
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 6.9e-100 368.2 394 52.5
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.0e-98 364.4 337 55.8
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.7e-98 363.6 334 57.5
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 2.2e-98 363.2 346 57.2
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 2.9e-98 362.8 368 54.9
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 8.4e-98 361.3 382 53.9
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.4e-97 360.5 461 47.3
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 3.2e-97 359.4 373 52.0
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 4.2e-97 359.0 415 48.0
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.6e-96 357.1 344 55.8
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 3.0e-95 352.8 353 53.5
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 8.7e-95 351.3 339 53.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 8.7e-95 351.3 318 59.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.7e-93 345.9 351 53.8
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.4e-92 344.0 318 58.8
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.1e-92 342.8 338 56.8
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.2e-91 340.9 327 57.2
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 5.9e-91 338.6 325 57.8
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-90 337.8 320 57.8
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 3.8e-90 335.9 294 59.5
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.9e-89 333.6 359 53.5
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.6e-88 330.5 328 57.9
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.6e-88 330.5 346 52.3
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.3e-87 327.4 467 43.5
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 5.1e-87 325.5 298 60.4
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.1e-86 324.3 280 60.7
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.5e-86 323.9 312 55.4
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.6e-85 320.5 312 55.4
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 2.2e-85 320.1 317 54.9
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 8.2e-85 318.2 334 53.0
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.4e-84 317.4 335 50.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 3.1e-84 316.2 266 62.0
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 6.5e-82 308.5 566 36.9
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.4e-81 307.4 332 51.8
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.5e-81 306.6 316 54.1
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 3.2e-81 306.2 331 52.0
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.1e-80 303.5 371 49.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.2e-77 291.6 226 65.5
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.4e-76 290.0 409 43.5
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 6.9e-76 288.5 350 46.9
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.3e-74 284.3 257 59.5
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.4e-70 269.2 355 44.8
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 5.7e-70 268.9 313 48.9
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 1.6e-67 260.8 297 49.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.6e-67 260.0 353 44.2
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 7.7e-67 258.5 348 45.7
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 2.2e-66 256.9 310 49.0
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.9e-66 256.5 308 47.1
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 5.9e-59 232.3 283 55.8
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 2.7e-56 223.4 331 41.1
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.6e-56 223.0 230 53.9
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 4.7e-56 222.6 160 68.8
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 9.8e-54 214.9 158 68.4
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 7.2e-49 198.7 342 35.4
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.0e-48 195.3 210 54.3
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.8e-47 194.1 128 71.9
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 3.0e-47 193.4 374 34.0
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.0e-46 190.7 206 51.0
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 3.7e-45 186.4 351 36.5
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.1e-44 184.9 160 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 5.4e-44 182.6 314 36.3
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.5e-41 174.5 165 56.4
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 5.7e-38 162.5 294 35.7
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 2.4e-36 157.1 175 50.3
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.4e-36 156.0 114 67.5
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.3e-34 150.6 115 63.5
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.3e-34 150.6 115 63.5
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.4e-31 141.4 104 66.3
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.0e-30 137.5 130 63.1
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 5.8e-30 136.0 221 38.5
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 1.2e-22 111.7 136 50.0
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-22 111.3 185 38.4
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.5e-22 111.3 128 51.6
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 1.9e-20 104.4 70 81.4
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 7.1e-20 102.4 133 51.1
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 7.1e-20 102.4 72 79.2
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 7.1e-20 102.4 133 51.1
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 1.2e-19 101.7 70 80.0
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 2.1e-19 100.9 72 77.8
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 7.8e-19 99.0 118 47.5
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 6.6e-18 95.9 73 76.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 8.6e-18 95.5 105 50.5
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 1.8e-15 87.8 55 85.5
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 1.8e-15 87.8 55 85.5
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 5.2e-15 86.3 321 27.1
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.0e-14 84.3 86 47.7
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 9.6e-09 65.5 71 56.3
BolC6t36015H Brassica oleracea HOM05D004482 ORTHO05D005212 6.9e-07 59.3 41 78.0
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 9.0e-07 58.9 242 24.8
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 1.2e-06 58.5 48 64.6


User provided reference genes

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