Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 3.4e-158 561.6 280 100.0
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 2.4e-135 485.7 281 86.8
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 8.4e-133 477.2 282 84.8
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 1.4e-132 476.5 282 84.8
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 7.1e-132 474.2 280 83.2
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 9.2e-132 473.8 282 84.4
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 9.2e-132 473.8 282 84.4
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 9.2e-132 473.8 282 84.4
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.3e-128 463.4 281 82.9
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 1.2e-126 456.8 281 80.8
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 7.9e-107 391.0 267 73.4
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 3.7e-104 382.1 282 67.7
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 3.4e-94 349.0 218 80.3
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.4e-87 327.0 257 62.3
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.1e-84 317.4 277 56.3
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 2.1e-83 313.2 257 59.5
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 1.8e-82 310.1 280 55.4
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 1.8e-82 310.1 267 56.2
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.0e-82 309.3 267 56.9
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 3.0e-82 309.3 248 60.5
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 5.1e-82 308.5 235 62.1
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 8.8e-82 307.8 262 57.6
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 8.8e-82 307.8 238 63.0
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 2.6e-81 306.2 251 59.8
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 3.3e-81 305.8 252 58.7
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 4.4e-81 305.4 258 57.0
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 9.7e-81 304.3 226 62.8
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 2.8e-80 302.8 246 58.5
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.7e-80 302.4 260 56.9
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 6.3e-80 301.6 226 62.8
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 1.1e-79 300.8 279 53.8
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.8e-79 300.1 260 56.5
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 1.8e-79 300.1 252 58.3
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 2.4e-79 299.7 253 57.7
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 3.1e-79 299.3 224 64.3
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 3.1e-79 299.3 247 57.9
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 5.3e-79 298.5 238 60.9
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 7.0e-79 298.1 246 58.9
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.2e-78 297.4 251 58.2
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.5e-78 297.0 247 60.7
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.5e-78 297.0 247 60.7
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 2.6e-78 296.2 250 57.2
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 3.5e-78 295.8 252 57.9
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 3.5e-78 295.8 227 63.9
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 5.9e-78 295.0 277 53.4
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 1.0e-77 294.3 251 57.4
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 1.3e-77 293.9 253 56.9
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 3.8e-77 292.4 251 53.4
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 3.8e-77 292.4 240 59.2
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 6.5e-77 291.6 249 56.6
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 6.5e-77 291.6 248 60.1
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 8.5e-77 291.2 224 60.3
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 3.2e-76 289.3 238 58.8
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 7.2e-76 288.1 251 55.4
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 7.2e-76 288.1 268 53.0
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 7.2e-76 288.1 268 53.0
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 7.2e-76 288.1 249 55.0
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 1.2e-75 287.3 267 54.3
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.2e-75 287.3 227 60.4
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.6e-75 287.0 268 53.0
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 2.1e-75 286.6 237 59.1
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 4.7e-75 285.4 238 60.5
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 4.7e-75 285.4 248 54.8
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 1.0e-74 284.3 248 54.4
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.4e-74 283.9 246 58.1
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 5.2e-74 282.0 251 53.4
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 6.7e-74 281.6 238 60.1
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 8.8e-74 281.2 231 60.2
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 1.5e-73 280.4 251 52.6
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 1.5e-73 280.4 244 55.7
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 9.7e-73 277.7 238 57.1
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.7e-72 275.8 238 58.4
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 3.1e-71 272.7 246 55.3
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 4.1e-71 272.3 246 54.9
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 5.0e-69 265.4 246 54.9
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 2.7e-67 259.6 224 59.8
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 4.7e-67 258.8 215 60.9
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 1.0e-66 257.7 231 53.7
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 1.0e-66 257.7 199 63.3
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.8e-66 256.9 226 53.1
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 3.4e-65 252.7 244 52.5
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 3.1e-63 246.1 226 51.8
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 7.0e-63 245.0 204 59.3
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 5.9e-62 241.9 134 88.1
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 9.4e-60 234.6 217 54.4
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 9.4e-60 234.6 229 52.4
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 3.6e-59 232.6 175 61.1
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.0e-58 231.1 230 49.6
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 1.4e-58 230.7 266 43.6
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 2.2e-56 223.4 225 46.2
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 4.9e-56 222.2 190 56.8
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 6.6e-53 211.8 165 58.8
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 1.1e-52 211.1 173 59.5
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 4.4e-49 199.1 182 54.9
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.9e-45 186.0 251 40.6
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 5.8e-41 172.2 226 39.4
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.3e-40 171.0 140 57.1
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 3.2e-39 166.4 133 57.9
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.2e-39 166.4 181 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.0e-38 163.7 222 36.0
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 2.7e-38 163.3 193 49.2
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.7e-37 160.6 219 37.9
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.1e-28 131.3 135 51.9
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 1.8e-26 124.0 129 47.3
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.2e-25 121.3 120 50.8
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.6e-25 120.2 207 32.4
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.4e-23 114.4 230 31.7
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.2e-22 111.3 214 29.4
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 2.6e-17 93.6 204 29.9
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.8e-16 89.7 246 26.8
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 1.1e-15 88.2 74 54.1
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 2.4e-15 87.0 103 49.5
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 7.1e-15 85.5 114 40.4
Carub.0004s3068 Capsella rubella HOM05D006617 ORTHO05D008247 1.2e-14 84.7 48 85.4
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.1e-11 73.9 187 27.3
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 8.1e-11 72.0 223 26.0
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 5.3e-10 69.3 221 24.9
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 9.0e-10 68.6 224 25.9
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.5e-09 67.8 223 25.6
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 2.0e-09 67.4 223 26.0
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 2.6e-09 67.0 231 24.7
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 7.6e-09 65.5 228 24.6
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 9.9e-09 65.1 228 25.0
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 2.9e-08 63.5 218 28.4
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 1.4e-07 61.2 66 53.0
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 1.9e-07 60.8 224 24.1
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 2.4e-07 60.5 217 23.0
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 2.4e-07 60.5 224 22.8
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 2.4e-07 60.5 227 22.9
CANSAT46G0002 Cannabis sativa HOM05D003252 ORTHO05D003640 3.2e-07 60.1 225 23.1
CANSAT56G4065 Cannabis sativa HOM05D003252 ORTHO05D003640 4.2e-07 59.7 225 23.1
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 7.1e-07 58.9 224 23.2
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 1.2e-06 58.2 216 22.7
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 1.6e-06 57.8 69 44.9
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 2.1e-06 57.4 217 22.6
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.1e-06 57.4 207 25.1
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 2.7e-06 57.0 116 25.9
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 3.5e-06 56.6 227 22.5
arahy.Tifrunner.gnm1.ann1.25CQ7A Arachis hypogaea HOM05D003252 ORTHO05D003640 3.5e-06 56.6 226 22.6
arahy.Tifrunner.gnm1.ann1.B65556 Arachis hypogaea HOM05D003252 ORTHO05D003640 3.5e-06 56.6 226 22.6
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.5e-06 56.6 224 22.8
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 3.5e-06 56.6 233 21.5
vmacro06324 Vaccinium macrocarpon HOM05D003252 ORTHO05D003640 3.5e-06 56.6 224 23.7
Manes.16G097000 Manihot esculenta HOM05D003252 ORTHO05D003640 6.0e-06 55.8 224 21.9
SMO364G0166 Selaginella moellendorffii HOM05D003252 ORTHO05D003640 7.9e-06 55.5 113 30.1


User provided reference genes

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