Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.5e-91 339.7 204 100.0
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 7.6e-83 310.8 202 88.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 3.0e-71 272.3 205 86.3
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 4.3e-70 268.5 203 84.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 7.3e-70 267.7 202 75.7
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 9.6e-70 267.3 200 87.5
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 4.8e-69 265.0 202 81.2
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 4.8e-69 265.0 202 81.2
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 4.8e-69 265.0 202 81.2
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 8.1e-69 264.2 204 84.3
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.4e-68 263.5 202 82.7
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 3.8e-66 255.4 192 88.0
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 3.8e-66 255.4 192 88.0
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 6.4e-66 254.6 198 80.3
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 6.4e-66 254.6 198 80.3
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.4e-65 252.7 193 87.0
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 3.9e-63 245.4 205 79.0
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 4.9e-58 228.4 206 72.8
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.5e-54 216.1 203 61.6
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.1e-52 210.7 209 64.1
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 5.3e-52 208.4 193 70.5
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 4.5e-51 205.3 191 72.8
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 5.8e-51 204.9 205 66.8
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 7.6e-51 204.5 193 71.5
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.7e-50 203.4 202 62.4
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 2.5e-49 199.5 198 62.1
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 7.1e-49 198.0 197 57.4
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.6e-48 196.8 212 58.5
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.6e-48 196.8 205 62.0
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 3.5e-48 195.7 197 65.5
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 3.5e-48 195.7 207 65.2
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 6.0e-48 194.9 199 66.8
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 3.0e-47 192.6 198 62.1
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 6.7e-47 191.4 193 60.1
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 8.7e-47 191.0 203 63.5
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 1.5e-46 190.3 193 61.1
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.5e-46 190.3 193 61.7
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.5e-46 190.3 198 56.6
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.9e-46 189.9 199 62.8
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.9e-46 189.9 201 66.2
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.3e-46 189.1 204 59.8
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 4.3e-46 188.7 199 57.3
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.7e-46 188.3 198 57.1
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.4e-46 188.0 198 56.1
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 9.6e-46 187.6 193 61.7
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 1.3e-45 187.2 193 67.4
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.8e-45 186.0 196 60.2
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 2.8e-45 186.0 199 60.8
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.8e-45 186.0 202 58.4
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.8e-45 186.0 194 67.5
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 4.8e-45 185.3 193 60.6
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.3e-45 184.9 198 56.6
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 6.3e-45 184.9 190 67.9
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 8.2e-45 184.5 195 60.5
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.1e-44 184.1 200 59.5
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 1.4e-44 183.7 190 64.2
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.8e-44 183.3 198 58.1
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 4.1e-44 182.2 192 65.1
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 4.1e-44 182.2 199 65.3
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 4.1e-44 182.2 193 61.1
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 5.3e-44 181.8 198 57.6
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.3e-44 181.8 194 67.0
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 6.9e-44 181.4 201 65.2
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.2e-43 180.6 197 62.9
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.5e-43 180.3 202 56.9
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.5e-43 180.3 203 59.6
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 2.0e-43 179.9 198 57.6
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.6e-43 179.5 208 53.4
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 2.6e-43 179.5 199 62.8
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 2.6e-43 179.5 205 60.0
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 3.4e-43 179.1 196 67.3
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 4.5e-43 178.7 193 66.8
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 4.5e-43 178.7 192 63.0
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 5.9e-43 178.3 196 66.8
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 7.6e-43 177.9 194 58.2
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.0e-42 177.6 194 64.4
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 3.8e-42 175.6 197 62.4
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 5.0e-42 175.3 194 60.3
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.5e-42 174.9 194 60.3
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 8.5e-42 174.5 205 60.0
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.1e-41 174.1 206 62.1
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.4e-41 173.7 200 64.5
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 1.9e-41 173.3 196 56.1
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.2e-41 172.6 202 64.4
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 3.2e-41 172.6 200 58.0
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.2e-41 172.2 198 56.1
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 5.5e-41 171.8 204 62.3
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 2.1e-40 169.9 186 56.5
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 3.6e-40 169.1 197 61.4
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.1e-40 168.3 193 54.9
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 7.9e-40 167.9 202 64.4
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.8e-39 166.8 197 64.5
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 3.9e-39 165.6 194 63.4
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.5e-38 163.7 197 64.0
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 4.3e-38 162.2 200 60.0
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 4.3e-38 162.2 197 63.5
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 7.4e-38 161.4 197 58.9
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.3e-37 160.6 191 58.1
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.6e-37 160.2 207 56.5
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 2.2e-37 159.8 204 49.5
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 6.9e-36 154.8 204 47.5
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 5.5e-33 145.2 187 48.1
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.8e-31 140.2 121 61.2
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 6.7e-31 138.3 151 67.5
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 6.7e-31 138.3 192 56.2
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.3e-30 136.0 203 40.9
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 9.7e-30 134.4 205 57.6
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.7e-29 133.7 192 43.8
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.2e-29 133.3 171 48.0
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.8e-29 132.1 137 58.4
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.8e-28 130.2 203 48.3
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 3.1e-28 129.4 118 60.2
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.5e-27 127.1 141 60.3
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.9e-27 125.2 149 53.7
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-26 124.4 171 45.6
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 8.5e-26 121.3 190 43.2
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-25 120.9 171 44.4
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.7e-24 116.3 128 52.3
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 3.6e-24 115.9 162 51.9
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-22 110.2 128 50.8
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 4.4e-22 109.0 126 52.4
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-21 107.5 128 49.2
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.2e-21 106.7 191 52.9
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 8.2e-21 104.8 128 49.2
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.1e-20 104.4 118 52.5
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 5.0e-18 95.5 116 52.6
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 2.5e-17 93.2 106 69.8
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 8.0e-16 88.2 127 44.1
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.6e-14 83.2 92 52.2
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.7e-13 80.5 69 59.4
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 2.2e-13 80.1 118 50.8
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 4.2e-09 65.9 126 51.6
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 6.8e-07 58.5 80 42.5
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 8.8e-07 58.2 80 47.5
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 7.5e-06 55.1 43 60.5


User provided reference genes

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