Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g13570 Schrenkiella parvula HOM05D008879 ORTHO05D010552 1.5e-37 159.1 82 100.0
BcaB06g28488 Brassica carinata HOM05D008879 ORTHO05D010552 4.2e-32 141.0 82 87.8
C04p60330 Brassica napus HOM05D008879 ORTHO05D010552 4.2e-32 141.0 82 87.8
BolC4t27533H Brassica oleracea HOM05D008879 ORTHO05D010552 4.2e-32 141.0 82 87.8
BcaB01g04065 Brassica carinata HOM05D008879 ORTHO05D010552 7.1e-32 140.2 82 85.4
Thhalv10017588m.g Eutrema salsugineum HOM05D008879 ORTHO05D010552 9.3e-32 139.8 82 84.1
A04p23850 Brassica napus HOM05D008879 ORTHO05D010552 2.7e-31 138.3 82 85.4
BraA04t17908Z Brassica rapa HOM05D008879 ORTHO05D010552 2.7e-31 138.3 82 85.4
BcaB06g28411 Brassica carinata HOM05D008879 ORTHO05D010552 1.7e-30 135.6 82 82.9
BcaC01g05980 Brassica carinata HOM05D008879 ORTHO05D010552 1.7e-30 135.6 82 85.4
C03p20490 Brassica napus HOM05D008879 ORTHO05D010552 1.7e-30 135.6 82 85.4
BolC3t14429H Brassica oleracea HOM05D008879 ORTHO05D010552 1.7e-30 135.6 82 85.4
Carub.0004s1234 Capsella rubella HOM05D008879 ORTHO05D010552 5.1e-30 134.0 82 84.1
BcaC02g11194 Brassica carinata HOM05D008879 ORTHO05D010552 6.6e-30 133.7 81 81.5
A05p14570 Brassica napus HOM05D008879 ORTHO05D010552 6.6e-30 133.7 81 80.2
C04p19410 Brassica napus HOM05D008879 ORTHO05D010552 6.6e-30 133.7 81 81.5
BolC4t23473H Brassica oleracea HOM05D008879 ORTHO05D010552 6.6e-30 133.7 81 81.5
A03p17370 Brassica napus HOM05D008879 ORTHO05D010552 1.5e-29 132.5 83 85.5
BraA03t11008Z Brassica rapa HOM05D008879 ORTHO05D010552 9.6e-29 129.8 83 84.3
CARHR124670 Cardamine hirsuta HOM05D008879 ORTHO05D010552 9.6e-29 129.8 81 81.5
AL4G26270 Arabidopsis lyrata HOM05D008879 ORTHO05D010552 3.1e-27 124.8 81 79.0
AT2G31085 Arabidopsis thaliana HOM05D008879 ORTHO05D010552 9.0e-27 123.2 82 76.8
CARHR124660 Cardamine hirsuta HOM05D008879 ORTHO05D010552 1.2e-26 122.9 81 76.5
AT2G31083 Arabidopsis thaliana HOM05D008879 ORTHO05D010552 2.6e-26 121.7 82 76.8
Carub.0004s1233 Capsella rubella HOM05D008879 ORTHO05D010552 5.8e-26 120.6 81 72.8
BcaB02g10362 Brassica carinata HOM05D008879 ORTHO05D010552 1.7e-25 119.0 81 74.1
AL4G26260 Arabidopsis lyrata HOM05D008879 ORTHO05D010552 2.9e-25 118.2 82 74.4
THA.LOC104815845 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 4.0e-19 97.8 82 61.0
THA.LOC104826219 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 4.0e-19 97.8 82 63.4
THA.LOC104826220 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 4.0e-19 97.8 82 63.4
Aa31LG5G5820 Aethionema arabicum HOM05D008879 ORTHO05D010552 1.3e-17 92.8 63 73.0
Ciclev10018336m.g Citrus clementina HOM05D008879 ORTHO05D010552 1.9e-13 79.0 84 53.6
Haze_13339 Corylus avellana HOM05D008879 ORTHO05D010552 9.0e-11 70.1 83 51.8
Cfa014710 Carpinus fangiana HOM05D008879 ORTHO05D010552 4.5e-10 67.8 83 49.4
Potri.019G090800 Populus trichocarpa HOM05D008879 ORTHO05D010552 6.5e-09 63.9 80 45.0
Sabra19G0104400 Salix brachista HOM05D008879 ORTHO05D010552 4.2e-08 61.2 82 40.2
TWI14G0991 Tripterygium wilfordii HOM05D008879 ORTHO05D010552 7.1e-08 60.5 82 46.3
Potri.001G376200 Populus trichocarpa HOM05D008879 ORTHO05D010552 1.6e-07 59.3 83 43.4
Sabra13G0100400 Salix brachista HOM05D008879 ORTHO05D010552 1.6e-07 59.3 62 51.6
COL.COLO4_17611 Corchorus olitorius HOM05D017499 ORTHO05D010552 2.7e-07 58.5 59 50.8
TAR624G1413 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.7e-07 58.5 83 42.2
Thecc.06G174800 Theobroma cacao HOM05D012232 ORTHO05D013262 3.5e-07 58.2 83 41.0
Manes.15G091400 Manihot esculenta HOM05D017499 ORTHO05D010552 2.3e-06 55.5 81 42.0
CSS0007483 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D013262 3.9e-06 54.7 81 38.3
Rhsim04G0073300 Rhododendron simsii HOM05D039447 ORTHO05D019109 3.9e-06 54.7 80 38.8
Gohir.D09G002000 Gossypium hirsutum HOM05D045456 ORTHO05D010552 5.1e-06 54.3 81 43.2
Gorai.006G002100 Gossypium raimondii HOM05D045456 ORTHO05D010552 5.1e-06 54.3 81 43.2
CSS0029563 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 6.7e-06 53.9 43 60.5
CSS0045732 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 6.7e-06 53.9 43 60.5
Thecc.10G087500 Theobroma cacao HOM05D012232 ORTHO05D013262 6.7e-06 53.9 83 38.6
Prupe.4G170800 Prunus persica HOM05D010237 ORTHO05D012351 8.7e-06 53.5 75 48.0


User provided reference genes

Program Settings