Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 1.7e-174 615.9 325 100.0
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 4.6e-143 511.5 325 85.8
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 1.2e-135 486.9 309 80.9
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 6.1e-135 484.6 309 80.6
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 6.1e-135 484.6 309 80.6
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 6.1e-135 484.6 309 80.6
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 1.5e-133 479.9 309 79.9
Carub.0004s1167 Capsella rubella HOM05D008517 ORTHO05D010482 7.4e-133 477.6 325 79.1
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 7.0e-131 471.1 313 80.8
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 2.9e-129 465.7 325 78.2
AT2G30505 Arabidopsis thaliana HOM05D008517 ORTHO05D010482 1.2e-127 460.3 312 77.2
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 1.0e-126 457.2 325 75.1
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 1.4e-126 456.8 326 79.1
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 1.4e-126 456.8 326 79.1
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 3.0e-126 455.7 326 78.2
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 5.2e-126 454.9 326 79.1
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 3.3e-125 452.2 326 78.8
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 3.3e-125 452.2 326 78.8
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 4.0e-86 322.4 337 57.9
THA.LOC104800796 Tarenaya hassleriana HOM05D008517 ORTHO05D010482 1.7e-52 210.7 190 56.8
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 2.5e-43 180.3 192 47.4
Eucgr.J01845 Eucalyptus grandis HOM05D008517 ORTHO05D010482 7.4e-24 115.5 202 34.7
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 6.3e-23 112.5 190 35.8
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 1.4e-22 111.3 159 37.7
Lj6g0010191 Lotus japonicus HOM05D008517 ORTHO05D010482 5.9e-21 105.9 198 33.3
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 1.3e-20 104.8 191 39.3
Ca_15071_v3 Cicer arietinum L. HOM05D008517 ORTHO05D010482 1.7e-20 104.4 245 29.4
Medtr3g062470 Medicago truncatula HOM05D008517 ORTHO05D010482 3.8e-20 103.2 245 30.2
Prupe.6G039500 Prunus persica HOM05D016692 ORTHO05D010482 1.9e-19 100.9 242 29.8
MD11G1051900 Malus domestica HOM05D016692 ORTHO05D010482 5.5e-19 99.4 235 29.8
Psat5g147520 Pisum sativum HOM05D008517 ORTHO05D010482 5.5e-19 99.4 219 30.6
arahy.Tifrunner.gnm1.ann1.92WL97 Arachis hypogaea HOM05D008517 ORTHO05D010482 7.2e-19 99.0 189 29.6
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 7.2e-19 99.0 202 31.2
Atru.chr10.2344 Acer truncatum HOM05D008517 ORTHO05D010482 1.2e-18 98.2 242 28.5
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 1.6e-18 97.8 245 28.6
Actinidia23156 Actinidia chinensis HOM05D000033 ORTHO05D000913 2.7e-18 97.1 302 26.8
FAN21G3878 Fragaria x ananassa HOM05D016692 ORTHO05D010482 2.7e-18 97.1 286 29.0
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 2.7e-18 97.1 187 29.4
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 3.6e-18 96.7 225 29.8
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 1.0e-17 95.1 200 31.0
Phvul.006G080100 Phaseolus vulgaris HOM05D008517 ORTHO05D010482 1.8e-17 94.4 215 32.6
arahy.Tifrunner.gnm1.ann1.Q24W9G Arachis hypogaea HOM05D008517 ORTHO05D010482 2.3e-17 94.0 245 27.3
Lalb_Chr15g0085691 Lupinus albus HOM05D008517 ORTHO05D010482 3.0e-17 93.6 241 29.0
FAN25G0531 Fragaria x ananassa HOM05D000033 ORTHO05D000913 5.2e-17 92.8 306 27.8
RcHm_v2.0_Chr5g0073561 Rosa chinensis HOM05D016692 ORTHO05D010482 8.8e-17 92.0 254 30.3
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 1.1e-16 91.7 201 28.9
MD03G1049700 Malus domestica HOM05D016692 ORTHO05D010482 1.5e-16 91.3 243 29.2
VMungo0540G2173 Vigna mungo HOM05D008517 ORTHO05D010482 4.4e-16 89.7 249 27.7
MSTRG.12716 Avicennia marina HOM05D008517 ORTHO05D010482 5.7e-16 89.4 203 29.6
Glyma.18G051200 Glycine max HOM05D008517 ORTHO05D010482 7.4e-16 89.0 160 34.4
Lalb_Chr18g0054121 Lupinus albus HOM05D008517 ORTHO05D010482 1.3e-15 88.2 198 29.3
Glyma.11G199600 Glycine max HOM05D008517 ORTHO05D010482 1.4e-14 84.7 193 28.5
FvH4_3g40830 Fragaria vesca HOM05D016692 ORTHO05D010482 2.4e-14 84.0 256 28.1
FAN11G0742 Fragaria x ananassa HOM05D016692 ORTHO05D010482 9.1e-14 82.0 256 28.1
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 3.8e-12 76.6 251 29.9
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 7.2e-11 72.4 201 29.4
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.3e-09 67.4 266 26.3
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 3.0e-09 67.0 189 24.9
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 5.2e-09 66.2 172 30.8
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 8.8e-09 65.5 161 28.0
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 1.2e-08 65.1 163 31.9
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.5e-08 64.7 158 29.7
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 2.6e-08 63.9 173 28.9
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 4.4e-08 63.2 163 30.7
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 4.4e-08 63.2 163 30.7
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 4.4e-08 63.2 163 30.7
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 4.4e-08 63.2 163 29.4
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 4.4e-08 63.2 153 26.1
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 4.4e-08 63.2 156 25.0
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 5.7e-08 62.8 163 30.7
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 5.7e-08 62.8 158 29.7
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.2e-07 60.8 158 23.4
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.2e-07 60.8 125 35.2
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 4.8e-07 59.7 159 26.4
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 6.3e-07 59.3 159 24.5
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 6.3e-07 59.3 155 25.2
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 8.2e-07 58.9 158 27.8
SGA_v2.0_scaffold77G25347 Striga asiatica HOM05D000070 ORTHO05D003837 1.1e-06 58.5 161 30.4
TPR.G3540 Trifolium pratense HOM05D002137 ORTHO05D002144 1.4e-06 58.2 168 27.4
Psat0ss1279g0440 Pisum sativum HOM05D002137 ORTHO05D002144 7.0e-06 55.8 157 27.4
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 7.0e-06 55.8 165 24.8
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 9.1e-06 55.5 157 21.7


User provided reference genes

Program Settings