Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 7.2e-130 467.2 233 100.0
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 5.4e-109 397.9 233 84.5
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 9.2e-109 397.1 233 84.1
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 4.5e-108 394.8 234 87.2
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.5e-106 389.8 229 85.2
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.5e-106 389.8 234 85.9
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.5e-106 389.8 230 87.0
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 7.3e-106 387.5 231 86.1
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 4.7e-105 384.8 231 85.7
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 4.7e-105 384.8 236 85.2
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 4.0e-104 381.7 232 81.9
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 9.8e-103 377.1 232 80.2
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.1e-101 373.6 229 81.2
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.5e-95 350.9 243 70.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.7e-94 348.6 242 72.3
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.3e-86 323.6 241 68.9
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.1e-84 316.2 235 65.5
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.0e-84 314.7 235 65.1
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.0e-84 314.7 235 65.1
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.0e-83 312.4 244 64.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 3.0e-83 312.4 246 63.0
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.5e-82 310.1 242 64.0
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.9e-82 309.7 255 61.2
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 3.3e-82 308.9 254 59.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 4.3e-82 308.5 243 64.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 7.3e-82 307.8 251 61.8
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.2e-81 307.0 241 65.1
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.6e-81 306.6 250 64.0
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.6e-81 306.6 257 60.7
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 2.1e-81 306.2 234 65.0
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-81 306.2 237 62.4
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 2.1e-81 306.2 250 60.0
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.1e-81 306.2 232 64.2
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.6e-81 305.4 234 65.8
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 4.7e-81 305.1 251 61.0
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 4.7e-81 305.1 241 63.1
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 6.2e-81 304.7 235 62.1
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 2.3e-80 302.8 247 61.1
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.1e-80 302.4 250 63.2
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.1e-80 302.4 249 63.1
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 4.0e-80 302.0 185 76.8
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.0e-80 302.0 250 60.4
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 6.8e-80 301.2 239 65.3
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 8.9e-80 300.8 233 63.1
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.2e-79 300.4 203 69.5
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.5e-79 300.1 233 61.8
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.0e-79 299.7 247 60.7
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 2.0e-79 299.7 240 61.2
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.4e-79 298.9 233 61.4
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.4e-79 298.9 233 61.4
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.4e-79 298.9 233 64.4
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.4e-79 298.5 247 60.3
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 4.4e-79 298.5 247 63.6
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.4e-79 298.5 249 59.8
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 4.4e-79 298.5 253 60.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 5.8e-79 298.1 220 65.9
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 9.9e-79 297.4 266 58.6
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 9.9e-79 297.4 200 68.5
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.3e-78 297.0 239 63.6
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 3.8e-78 295.4 180 74.4
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 3.8e-78 295.4 249 61.8
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 4.9e-78 295.0 214 65.0
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 8.4e-78 294.3 229 62.4
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 8.4e-78 294.3 240 60.4
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 1.1e-77 293.9 243 60.9
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.1e-77 293.9 234 62.4
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.1e-77 293.9 250 57.6
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.4e-77 293.5 246 58.1
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.4e-77 293.5 247 59.9
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.4e-77 293.5 239 63.6
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.4e-77 293.5 213 68.5
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.4e-77 292.7 245 58.8
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 9.2e-77 290.8 240 60.4
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.2e-76 290.4 251 60.6
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.2e-76 290.4 184 70.7
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.1e-76 289.7 250 58.8
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.1e-76 289.7 243 62.1
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 4.6e-76 288.5 234 60.7
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.0e-76 288.1 234 60.7
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 3.0e-75 285.8 291 55.0
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.9e-75 285.4 187 70.1
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 3.9e-75 285.4 234 60.3
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 6.6e-75 284.6 183 70.5
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.9e-74 283.1 233 60.9
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 5.6e-74 281.6 240 60.4
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 7.3e-74 281.2 270 54.4
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.2e-73 280.4 246 57.7
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-73 279.3 250 56.8
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 5.2e-72 275.0 251 56.6
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 1.2e-71 273.9 167 76.6
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.0e-71 273.1 246 56.9
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 4.4e-71 271.9 172 70.3
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 9.9e-71 270.8 250 56.0
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.7e-70 270.0 214 61.2
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.9e-69 266.5 248 56.5
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.1e-69 264.6 211 59.7
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.5e-68 262.3 205 61.5
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.1e-66 257.3 345 45.8
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 9.6e-66 254.2 205 58.5
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.8e-65 252.7 211 57.8
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 4.8e-65 251.9 213 62.4
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 7.6e-63 244.6 212 58.5
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 7.6e-63 244.6 187 63.6
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.3e-62 243.8 202 62.4
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.7e-62 243.4 185 63.8
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 2.9e-62 242.7 233 52.4
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 4.2e-61 238.8 232 53.4
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 5.4e-61 238.4 243 53.5
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.6e-60 235.3 245 50.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 3.0e-59 232.6 167 64.1
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 5.1e-59 231.9 170 63.5
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 9.6e-58 227.6 248 54.0
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.6e-57 226.9 226 52.2
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 4.0e-56 222.2 146 68.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.9e-54 216.1 161 62.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.9e-53 213.4 189 53.4
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.3e-49 200.7 175 60.0
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 2.8e-49 199.5 185 54.6
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 4.5e-47 192.2 129 72.9
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 7.6e-47 191.4 177 57.1
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 7.6e-47 191.4 188 53.7
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.0e-46 191.0 226 44.2
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.2e-46 189.9 132 75.0
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 8.4e-46 188.0 182 55.5
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 2.3e-43 179.9 211 43.6
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 9.7e-42 174.5 119 78.2
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 6.3e-41 171.8 118 76.3
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.9e-38 162.9 146 60.3
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 8.5e-38 161.4 134 66.4
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 8.5e-38 161.4 134 66.4
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.4e-37 160.6 116 63.8
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 3.9e-35 152.5 202 46.0
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 5.7e-34 148.7 188 47.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 2.8e-33 146.4 154 51.9
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.7e-33 146.0 179 45.8
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 6.3e-33 145.2 166 51.8
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 8.2e-33 144.8 155 52.3
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 8.2e-33 144.8 101 66.3
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.3e-32 142.1 147 53.1
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 7.7e-31 138.3 95 67.4
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 4.2e-29 132.5 131 51.1
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.0e-23 113.6 65 81.5
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 3.4e-23 112.8 211 34.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 3.8e-22 109.4 68 72.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 4.2e-21 105.9 83 61.4
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 7.0e-16 88.6 70 58.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.2e-15 87.8 69 60.9
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-13 80.9 84 59.5
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 7.2e-13 78.6 84 54.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 4.7e-12 75.9 61 57.4
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 4.7e-12 75.9 119 44.5
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.8e-11 73.9 105 45.7


User provided reference genes

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