Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.4e-90 335.5 168 100.0
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.2e-81 306.6 166 93.4
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.0e-81 305.8 168 91.7
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.3e-77 293.1 167 89.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.3e-77 293.1 167 89.2
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.3e-77 293.1 166 88.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.3e-77 292.4 167 89.2
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 5.1e-77 291.2 166 88.0
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.1e-77 291.2 167 88.6
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 6.7e-77 290.8 167 88.6
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.5e-76 288.9 167 87.4
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 4.3e-76 288.1 166 87.3
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 8.1e-75 283.9 168 85.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.4e-74 282.3 168 86.3
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.9e-72 275.4 166 83.1
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 4.9e-72 274.6 166 83.1
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 4.9e-72 274.6 166 83.1
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-70 270.0 168 82.7
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.3e-69 265.8 166 81.3
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 6.7e-69 264.2 162 82.1
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 9.7e-60 233.8 169 74.0
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 3.4e-57 225.3 166 70.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-56 223.4 166 69.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.2e-56 222.6 166 68.7
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.2e-56 222.6 165 68.5
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 5.0e-56 221.5 166 68.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 5.0e-56 221.5 166 69.9
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 8.5e-56 220.7 166 68.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 8.5e-56 220.7 166 67.5
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.4e-55 219.9 166 68.1
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 3.2e-55 218.8 164 68.3
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 4.2e-55 218.4 166 67.5
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 7.2e-55 217.6 169 66.3
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 7.2e-55 217.6 166 68.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.6e-54 216.5 166 66.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.7e-54 215.7 166 66.3
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.7e-54 215.7 166 68.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 3.6e-54 215.3 166 67.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.6e-54 215.3 166 66.9
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.6e-54 214.9 166 66.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 7.9e-54 214.2 132 80.3
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.0e-53 213.8 166 68.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.8e-53 213.0 166 67.5
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.3e-53 212.6 167 66.5
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.3e-53 212.6 165 65.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 8.8e-53 210.7 164 66.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.1e-52 210.3 166 65.1
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.0e-52 209.5 166 64.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.5e-52 209.1 165 66.7
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 3.3e-52 208.8 166 65.1
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.7e-52 208.0 165 66.1
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 7.4e-52 207.6 166 64.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 7.4e-52 207.6 166 64.5
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 9.7e-52 207.2 166 64.5
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.7e-51 206.5 168 64.3
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.7e-51 206.5 167 64.7
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 8.2e-51 204.1 166 63.9
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.1e-50 203.8 166 63.9
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 2.4e-50 202.6 168 62.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 4.1e-50 201.8 165 62.4
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.1e-50 201.8 112 89.3
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 5.3e-50 201.4 166 63.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.5e-49 199.9 165 62.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.5e-49 199.9 168 59.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.5e-49 198.4 166 62.0
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.5e-49 198.4 168 59.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 7.7e-49 197.6 169 62.7
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.7e-48 196.4 165 62.4
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.7e-48 196.4 169 62.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.2e-48 196.1 166 63.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.2e-48 196.1 169 61.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 3.8e-48 195.3 165 63.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.8e-48 195.3 165 62.4
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 3.8e-48 195.3 165 62.4
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.0e-48 194.9 126 75.4
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 6.5e-48 194.5 165 60.6
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 8.5e-48 194.1 165 62.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.1e-47 193.7 165 61.2
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.4e-47 193.4 167 60.5
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.4e-47 193.4 166 60.2
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.9e-47 193.0 165 60.0
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.5e-47 192.6 160 61.9
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 3.2e-47 192.2 166 60.8
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.2e-47 191.8 165 62.4
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 7.2e-47 191.0 165 60.6
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.1e-46 189.5 165 59.4
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.1e-46 189.5 164 61.0
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 4.7e-46 188.3 165 61.8
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 6.1e-46 188.0 166 58.4
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.4e-45 186.8 166 59.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-45 186.4 165 61.2
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.3e-45 186.0 167 59.9
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 2.3e-45 186.0 166 59.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 6.7e-45 184.5 166 58.4
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.1e-44 183.7 165 58.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.5e-44 183.3 160 59.4
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.0e-44 183.0 169 57.4
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.6e-44 182.6 165 58.2
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.6e-44 182.6 166 60.2
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 4.4e-44 181.8 158 62.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 7.4e-44 181.0 167 58.7
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.3e-43 180.3 172 56.4
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.7e-43 179.9 166 56.6
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.7e-43 179.9 154 57.8
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.2e-43 179.5 166 59.6
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.2e-43 179.5 165 58.2
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.8e-43 179.1 160 60.0
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.3e-43 177.9 166 55.4
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 8.2e-43 177.6 166 59.0
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 8.2e-43 177.6 166 59.0
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.8e-42 176.4 166 57.8
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.1e-42 175.6 166 59.6
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.2e-41 173.7 161 57.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 7.7e-41 171.0 129 65.9
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.7e-40 169.9 159 55.3
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.9e-40 169.1 166 60.2
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.0e-40 168.3 166 57.2
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 4.2e-39 165.2 169 56.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 4.2e-39 165.2 127 67.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.2e-39 165.2 131 64.1
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.7e-38 161.8 127 63.8
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 8.8e-37 157.5 169 55.0
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 8.2e-35 151.0 126 61.1
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.6e-33 146.7 166 51.8
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.0e-33 146.4 129 58.1
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.0e-32 144.1 166 51.2
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.0e-32 144.1 128 57.8
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.7e-32 143.3 166 50.6
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.7e-32 143.3 162 48.1
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.7e-30 136.0 165 50.3
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.8e-29 131.3 157 46.5
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 3.4e-28 129.0 168 46.4
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.4e-28 128.6 158 43.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.3e-27 124.4 144 45.1
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.4e-26 122.9 158 48.7
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 7.0e-26 121.3 99 60.6
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.9e-24 115.9 133 44.4
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 7.2e-23 111.3 145 44.1
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-22 110.5 90 58.9
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.1e-22 109.8 141 40.4
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.3e-21 106.3 124 41.1
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 8.8e-21 104.4 78 66.7
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.3e-19 100.5 66 69.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.3e-15 85.5 97 46.4
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 7.3e-15 84.7 90 48.9
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 4.7e-14 82.0 39 97.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.0e-13 79.0 165 38.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 8.9e-13 77.8 68 60.3
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.2e-12 77.4 103 39.8
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.4e-12 75.9 82 50.0
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 9.8e-12 74.3 63 52.4
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-10 70.1 62 64.5
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.2e-10 69.3 67 61.2
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.0e-09 66.6 66 56.1
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.0e-08 62.8 62 54.8
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.9e-08 62.4 58 56.9
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.9e-08 62.4 58 56.9
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.9e-08 62.4 63 55.6
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.9e-08 62.4 40 75.0
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.0e-08 62.0 65 53.8
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.1e-07 60.8 80 38.8
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.3e-07 59.3 54 59.3
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 4.3e-07 58.9 105 35.2
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 9.5e-07 57.8 60 48.3
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.2e-06 55.1 63 39.7


User provided reference genes

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