Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 5.5e-303 1043.5 526 100.0
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 3.4e-260 901.4 527 85.4
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.0e-253 877.9 528 84.8
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 4.1e-250 867.8 546 83.2
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.3e-248 862.8 545 84.2
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 1.7e-248 862.4 545 84.4
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 1.7e-248 862.4 545 84.4
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 4.7e-246 854.4 544 83.3
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 4.7e-246 854.4 544 83.3
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 2.1e-230 802.4 548 76.1
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 2.0e-204 716.1 494 77.1
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.0e-204 716.1 526 69.4
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 1.9e-194 682.9 409 85.1
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 8.8e-192 674.1 408 84.6
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.7e-167 591.7 545 58.2
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.7e-167 591.7 545 58.5
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.8e-166 589.3 545 58.3
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 4.1e-165 585.5 544 57.0
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 1.0e-163 580.9 551 55.9
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.0e-160 570.9 550 56.5
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 6.8e-160 568.2 550 56.0
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 8.8e-160 567.8 546 55.5
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 1.5e-159 567.0 551 56.8
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 2.0e-159 566.6 557 55.3
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 3.4e-159 565.8 549 55.6
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.9e-158 562.0 554 56.0
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.4e-157 560.5 545 55.8
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.9e-155 552.7 543 54.5
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.1e-154 550.8 548 55.7
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.7e-153 545.4 511 57.1
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.0e-152 544.3 540 54.1
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 6.8e-152 541.6 543 54.3
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 8.9e-152 541.2 545 55.4
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.2e-151 540.8 551 52.1
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 5.7e-151 538.5 540 53.7
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.3e-150 537.3 532 53.9
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 2.2e-150 536.6 539 53.6
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 3.7e-150 535.8 550 54.0
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 1.4e-149 533.9 543 53.6
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.2e-148 530.8 533 52.9
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 1.3e-147 527.3 551 53.2
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.3e-147 527.3 568 53.0
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 6.6e-147 525.0 569 52.4
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 1.5e-146 523.9 490 56.3
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.6e-145 520.4 538 52.4
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.1e-145 520.0 591 50.1
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 6.2e-145 518.5 490 55.9
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 6.2e-145 518.5 544 52.9
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.0e-145 518.1 580 50.3
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.0e-144 517.7 521 53.6
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 1.8e-144 516.9 537 52.3
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 3.1e-144 516.2 590 49.3
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.5e-143 513.8 560 51.4
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 5.8e-143 511.9 494 55.1
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 9.8e-143 511.1 597 49.7
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.4e-141 507.3 562 51.2
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 2.4e-141 506.5 500 54.8
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 7.0e-141 505.0 560 49.8
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 1.2e-140 504.2 500 53.8
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.6e-140 503.8 497 52.9
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.0e-140 501.9 550 51.1
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.3e-139 500.7 550 51.1
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 2.3e-139 500.0 562 49.6
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 3.0e-139 499.6 556 49.3
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.5e-138 496.5 496 53.2
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 9.5e-138 494.6 473 55.4
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.2e-137 494.2 541 50.8
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.2e-137 494.2 446 57.4
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.6e-137 493.8 498 54.4
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 1.6e-137 493.8 584 48.8
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 8.1e-137 491.5 552 50.5
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 3.7e-134 482.6 587 47.9
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.4e-134 481.9 538 51.3
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 1.1e-133 481.1 550 50.7
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 1.4e-133 480.7 500 52.2
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 1.7e-131 473.8 505 50.9
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.3e-131 473.4 490 52.7
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 3.6e-129 466.1 556 45.1
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.2e-127 461.1 551 47.4
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 4.6e-124 449.1 446 54.3
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 1.0e-123 448.0 415 57.6
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 5.6e-122 442.2 517 48.5
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 4.7e-121 439.1 536 46.1
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 1.1e-117 427.9 542 45.2
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 2.4e-117 426.8 459 49.5
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 5.4e-117 425.6 541 45.5
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.7e-116 423.3 543 47.3
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.0e-115 421.4 558 43.9
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 4.3e-114 416.0 517 46.4
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 7.3e-114 415.2 518 45.0
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 1.3e-113 414.5 543 44.9
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 4.9e-110 402.5 555 43.6
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 8.4e-110 401.7 549 44.1
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 4.2e-109 399.4 528 43.2
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.0e-107 394.8 554 45.3
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.3e-107 394.4 574 41.8
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.1e-107 392.5 432 51.2
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 6.6e-107 392.1 401 53.9
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 5.8e-103 379.0 515 44.9
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 8.4e-102 375.2 437 49.2
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 3.2e-101 373.2 346 55.2
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 3.5e-100 369.8 462 45.5
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.5e-100 369.8 509 40.1
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 5.6e-98 362.5 449 47.9
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.5e-92 343.2 534 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 7.9e-92 342.0 497 39.4
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.3e-91 341.3 455 43.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.4e-87 326.6 524 38.0
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 7.6e-87 325.5 481 42.2
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 9.3e-85 318.5 430 42.8
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 8.2e-81 305.4 476 41.4
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 8.5e-78 295.4 571 34.2
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.2e-77 293.1 264 59.8
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 1.1e-74 285.0 221 65.6
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.2e-73 280.8 477 38.4
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 4.1e-72 276.6 470 38.5
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 1.7e-70 271.2 462 38.1
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.9e-70 270.4 435 39.5
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 1.6e-68 264.6 439 39.9
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.7e-68 263.1 274 50.0
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 5.0e-62 243.0 320 44.7
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 4.5e-55 219.9 345 40.3
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 9.8e-50 202.2 378 36.5
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 1.3e-49 201.8 360 37.5
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 7.0e-40 169.5 193 47.7
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 4.5e-39 166.8 166 52.4
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 1.8e-32 144.8 118 61.0
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 9.2e-32 142.5 111 71.2
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.5e-29 135.2 97 64.9
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 2.2e-25 121.3 309 31.1
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.9e-25 120.9 372 28.5
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 5.0e-22 110.2 72 75.0
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.0e-19 100.5 68 66.2
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.0e-19 100.5 69 69.6
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 8.9e-19 99.4 68 70.6
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 2.0e-18 98.2 131 42.0
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 7.5e-18 96.3 214 31.3
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.6e-15 88.6 58 70.7
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.1e-13 82.4 52 75.0
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 1.4e-11 75.5 60 63.3
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.2e-10 72.4 221 28.1
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.5e-10 72.0 223 27.8
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 2.0e-10 71.6 99 38.4
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 5.8e-10 70.1 98 37.8
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 5.8e-10 70.1 160 31.9
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.2e-09 68.2 90 37.8
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 2.9e-09 67.8 89 38.2
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.9e-09 67.8 99 34.3
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 4.9e-09 67.0 99 34.3
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 4.9e-09 67.0 89 37.1
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 4.9e-09 67.0 89 37.1
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 6.4e-09 66.6 222 27.0
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.1e-08 65.9 96 35.4
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.4e-08 65.5 99 34.3
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 1.9e-08 65.1 222 26.1
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.4e-08 64.7 208 26.0
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 3.2e-08 64.3 229 27.9
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 3.2e-08 64.3 99 35.4
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 5.4e-08 63.5 179 30.7
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 7.1e-08 63.2 99 33.3
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 7.1e-08 63.2 99 36.4
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 7.1e-08 63.2 105 34.3
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 9.2e-08 62.8 146 30.8
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 9.2e-08 62.8 101 34.7
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 1.2e-07 62.4 98 33.7
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 1.6e-07 62.0 222 25.7
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 1.6e-07 62.0 99 33.3
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.7e-07 61.2 90 36.7
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.7e-07 61.2 90 36.7
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 2.7e-07 61.2 92 35.9
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 3.5e-07 60.8 110 31.8
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 4.6e-07 60.5 142 31.0
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 4.6e-07 60.5 89 32.6
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 4.6e-07 60.5 91 37.4
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 6.0e-07 60.1 90 36.7
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 6.0e-07 60.1 210 28.6
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 7.8e-07 59.7 220 25.0
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 3.9e-06 57.4 90 35.6


User provided reference genes

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