Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 4867.8 2502 100.0
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 4390.1 2504 90.6
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 4365.8 2505 90.2
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 4353.9 2504 89.9
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 4350.4 2508 89.9
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 4277.6 2504 88.8
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 4268.8 2504 88.6
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 4267.6 2536 87.9
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 4253.4 2536 87.6
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 4010.3 2217 93.2
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3971.4 2534 81.9
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3876.6 2526 79.9
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3316.2 2544 68.4
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3310.8 2557 67.9
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3310.4 2552 68.7
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3292.3 2550 68.1
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3280.3 2550 67.9
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3275.7 2558 67.4
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3257.6 2553 67.1
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3256.8 2544 67.7
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3254.5 2553 67.8
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3253.4 2545 67.0
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3251.8 2563 67.0
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3235.3 2567 67.2
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3234.5 2570 67.1
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3233.4 2581 66.4
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3212.9 2530 66.8
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3210.6 2545 66.8
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3188.7 2564 65.5
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3176.3 2525 66.2
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3175.6 2558 65.1
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3167.9 2518 66.2
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3161.3 2539 65.9
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3147.5 2533 65.7
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3147.1 2611 65.1
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3137.4 2535 65.5
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3135.5 2548 65.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3134.4 2525 65.5
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3118.9 2522 65.0
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3105.1 2527 64.7
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3103.5 2554 64.6
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3102.8 2578 63.8
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3093.9 2522 64.5
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3089.3 2529 65.2
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3085.4 2558 64.3
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3075.4 2543 63.6
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3053.1 2548 63.5
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3047.7 2525 63.8
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3019.6 2548 63.1
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 2997.6 2529 62.5
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 2972.2 2537 62.1
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 2969.9 2854 57.7
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2965.3 2529 61.9
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 2954.9 2564 62.0
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2936.4 2234 68.6
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2906.3 2528 61.7
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 2904.4 2588 61.2
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2898.2 2557 60.9
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 2890.5 2561 60.6
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 2859.7 2564 60.8
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 2858.9 2351 64.4
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2791.9 2538 59.4
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2788.1 2539 59.2
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2776.1 2538 58.8
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2738.4 2534 58.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2733.7 2413 61.0
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2712.9 2087 68.5
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2611.6 2623 56.5
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2574.7 1889 71.8
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2545.0 1871 71.4
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2538.5 2040 66.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2379.4 1723 71.9
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2332.0 1644 74.0
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2219.1 2294 54.3
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2172.9 1839 63.1
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2083.5 1748 63.0
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2023.1 1776 62.3
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2015.0 1727 63.6
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 1998.8 2693 45.0
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1917.9 2779 42.5
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1891.3 1688 60.2
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1587.8 2531 40.6
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1560.4 1185 68.1
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1548.1 1415 60.6
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1535.4 1179 69.6
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1525.4 1098 74.3
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1523.8 1146 70.0
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1418.7 1144 67.4
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1411.4 2614 37.0
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1370.5 2654 35.4
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1369.8 1153 65.0
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1359.4 1487 50.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1338.6 1608 47.3
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1243.0 856 75.8
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1236.9 1198 57.7
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1217.2 1472 47.5
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1214.9 1171 58.2
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1122.8 900 65.6
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1108.2 746 76.5
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 9.1e-271 938.7 1112 47.6
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.8e-261 906.7 699 69.1
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 2.0e-257 894.4 615 78.0
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 4.1e-247 860.1 1040 48.2
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.0e-237 828.9 1019 47.2
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.1e-231 808.9 640 66.7
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-222 778.9 908 48.7
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.0e-205 722.6 893 45.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.5e-193 682.2 740 51.2
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 3.3e-188 664.5 838 46.4
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-186 659.4 494 69.2
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 7.1e-175 620.2 845 48.4
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.3e-172 610.9 659 49.6
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.3e-171 609.4 684 48.8
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 5.9e-169 600.5 655 47.8
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 6.1e-158 563.9 487 59.5
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 6.1e-158 563.9 624 55.9
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-156 559.7 491 59.3
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.5e-152 543.9 385 69.6
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.2e-137 496.5 499 54.7
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.5e-135 487.6 547 50.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.4e-114 419.9 489 46.8
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.6e-108 399.1 515 43.3
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 8.1e-102 377.5 264 70.8
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.1e-94 350.9 239 77.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 5.2e-85 321.6 346 50.0
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.1e-81 309.7 180 84.4
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 4.0e-77 295.4 248 61.3
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 4.2e-74 285.4 180 76.1
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.2e-73 283.9 206 78.2
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 5.1e-72 278.5 216 65.3
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 1.5e-71 276.9 210 66.7
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.8e-69 270.0 322 48.4
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 5.3e-69 268.5 158 80.4
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 5.8e-68 265.0 151 87.4
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 6.0e-57 228.4 245 53.9
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 2.7e-49 203.0 288 43.1
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.8e-48 200.3 1950 23.0
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 3.9e-48 199.1 298 43.0
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 3.4e-44 186.0 314 39.5
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 3.2e-42 179.5 296 39.2
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.3e-40 173.3 338 33.1
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 9.7e-39 167.9 252 40.1
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 2.0e-36 160.2 105 75.2
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.5e-34 153.3 115 69.6
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 2.6e-28 133.3 118 70.3
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 3.8e-27 129.4 143 43.4
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.2e-26 125.9 143 48.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.3e-22 114.4 84 71.4
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 2.4e-21 110.2 100 68.0
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 2.4e-21 110.2 100 68.0
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.9e-18 100.5 120 44.2
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 3.2e-18 99.8 121 44.6
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 3.4e-15 89.7 68 70.6
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.7e-14 87.4 81 56.8
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 2.2e-14 87.0 88 55.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 2.2e-14 87.0 88 55.7
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.8e-14 85.9 138 46.4
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 8.3e-14 85.1 181 36.5
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 1.1e-13 84.7 120 40.8
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.2e-12 81.3 58 69.0
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.2e-12 81.3 75 53.3
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 2.7e-12 80.1 88 48.9
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 4.5e-12 79.3 58 70.7
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.1e-10 74.7 125 50.4
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-10 74.3 62 59.7
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.9e-10 73.9 75 65.3
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.0e-08 68.2 79 59.5
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 1.5e-07 64.3 90 45.6
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.5e-07 64.3 199 31.2
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 4.4e-07 62.8 105 41.9
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 7.5e-07 62.0 50 62.0
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.8e-06 60.1 60 48.3
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.8e-06 60.1 47 63.8


User provided reference genes

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