Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.4e-111 406.4 209 100.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 5.2e-103 377.9 208 91.8
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.1e-102 376.7 209 91.9
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-102 376.3 209 91.4
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 9.7e-102 373.6 209 92.8
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.7e-101 372.9 209 92.8
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-100 369.0 209 92.3
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 4.1e-100 368.2 209 91.4
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.3e-98 363.2 211 91.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 3.8e-98 361.7 215 88.8
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.8e-98 361.7 202 91.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.5e-97 359.8 215 87.9
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.2e-90 335.9 204 81.9
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 5.0e-90 334.7 204 79.9
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.5e-90 334.3 207 83.1
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.5e-89 332.4 204 80.9
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.2e-88 330.1 208 78.8
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.6e-88 329.7 207 83.6
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.6e-88 328.6 204 82.4
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 8.0e-88 327.4 205 81.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.3e-87 325.9 204 80.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.2e-86 323.6 209 79.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.8e-79 299.7 182 83.0
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 6.8e-79 297.7 176 81.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 3.7e-77 292.0 205 74.1
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 4.9e-77 291.6 207 72.9
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.4e-76 288.1 211 70.1
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.5e-75 285.0 210 71.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 4.5e-75 285.0 211 70.6
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.0e-74 283.9 206 71.4
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.0e-74 283.9 210 70.5
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 3.9e-74 282.0 205 71.2
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 9.5e-73 277.3 204 70.6
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.2e-72 276.9 212 67.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.7e-72 275.0 204 68.6
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.0e-71 273.9 205 66.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.4e-71 273.5 198 71.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.4e-71 273.5 206 70.4
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.8e-71 273.1 210 67.1
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.8e-71 273.1 205 69.3
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.8e-71 273.1 200 70.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.8e-71 273.1 194 72.7
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.3e-71 272.7 204 68.1
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.1e-71 272.3 205 68.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 5.2e-71 271.6 193 70.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.2e-71 271.6 204 69.1
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 5.2e-71 271.6 204 69.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 6.8e-71 271.2 209 67.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 8.9e-71 270.8 206 67.5
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.5e-70 270.0 206 68.0
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.0e-70 269.6 204 71.6
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.0e-70 269.6 212 67.5
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.0e-70 269.6 207 67.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.6e-70 269.2 200 69.0
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 3.4e-70 268.9 205 68.3
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.4e-70 268.9 208 67.8
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.4e-70 268.9 198 71.2
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 4.4e-70 268.5 208 65.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 7.5e-70 267.7 198 71.2
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 7.5e-70 267.7 199 68.8
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 9.8e-70 267.3 197 71.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.7e-69 266.5 195 71.3
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.7e-69 266.5 211 68.7
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.2e-69 266.2 198 69.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.2e-69 266.2 199 70.4
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.2e-69 266.2 198 67.7
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.9e-69 265.8 226 65.0
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.7e-69 265.4 198 69.7
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.7e-69 265.4 198 69.7
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 4.9e-69 265.0 204 68.6
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.1e-68 263.8 198 68.7
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.4e-68 263.5 204 68.6
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.9e-68 263.1 198 67.7
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.9e-68 263.1 200 69.0
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 3.2e-68 262.3 203 67.5
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.1e-68 261.9 196 68.4
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.4e-68 261.5 205 66.3
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 5.4e-68 261.5 193 70.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.2e-68 260.8 212 67.0
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 9.2e-68 260.8 204 66.2
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.6e-67 260.0 204 67.6
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.6e-67 260.0 177 74.0
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.0e-67 259.6 204 66.2
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.6e-67 258.5 203 67.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 4.6e-67 258.5 182 70.9
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 4.6e-67 258.5 205 66.3
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.8e-67 257.7 208 66.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.0e-66 257.3 204 66.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-66 256.9 190 66.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 3.9e-66 255.4 203 66.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 6.6e-66 254.6 203 67.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 6.6e-66 254.6 197 65.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.5e-65 253.4 207 66.2
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.5e-65 253.4 203 66.5
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.5e-65 253.4 203 66.0
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.3e-65 252.3 154 80.5
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 9.5e-65 250.8 202 65.3
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 9.5e-65 250.8 202 65.3
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.8e-64 249.2 188 67.6
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 3.6e-64 248.8 199 64.8
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.7e-64 248.4 153 79.1
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.8e-62 241.5 196 66.8
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 7.5e-62 241.1 190 67.4
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 7.5e-62 241.1 193 64.2
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.3e-61 240.4 201 65.7
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.9e-61 239.2 195 65.1
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.7e-61 238.8 193 62.7
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.7e-61 238.8 196 65.3
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 4.9e-61 238.4 190 63.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.4e-61 238.0 179 66.5
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 6.4e-61 238.0 182 69.2
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.9e-60 236.5 193 63.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 4.1e-60 235.3 157 77.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 4.1e-60 235.3 289 47.8
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.7e-59 232.6 182 67.6
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 3.5e-59 232.3 199 62.3
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-57 227.3 162 71.6
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.1e-57 227.3 191 62.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.1e-56 223.0 209 60.8
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-55 220.3 200 61.5
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.3e-55 219.5 192 57.8
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 8.9e-55 217.6 169 67.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 3.7e-53 212.2 149 71.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.2e-52 209.1 124 81.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 2.1e-51 206.5 128 81.2
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.4e-47 193.7 123 77.2
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.0e-46 189.9 206 55.8
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.4e-46 189.1 150 62.7
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.3e-45 187.2 188 54.8
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.2e-45 186.4 168 58.9
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.2e-44 182.2 163 63.2
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 3.5e-43 179.1 187 53.5
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.3e-40 170.6 113 72.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.6e-40 170.2 112 78.6
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.5e-38 163.7 102 80.4
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.4e-38 162.5 115 71.3
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.8e-37 159.1 188 48.4
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.9e-37 158.7 149 54.4
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.9e-34 149.1 164 50.0
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.1e-34 148.7 86 82.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.9e-33 146.7 141 52.5
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.9e-31 138.3 173 48.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.6e-27 127.1 74 77.0
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 6.0e-27 125.2 74 75.7
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 6.0e-27 125.2 99 65.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.0e-26 124.4 91 64.8
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-16 90.9 208 36.1
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 4.8e-16 89.0 148 37.8
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.2e-14 84.3 52 71.2
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 2.0e-14 83.6 184 31.5
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 7.6e-14 81.6 53 75.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 7.6e-14 81.6 52 71.2
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 2.5e-12 76.6 62 67.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.7e-11 73.2 56 69.6
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.6e-08 63.9 40 80.0


User provided reference genes

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