Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g04050 Schrenkiella parvula HOM05D003087 ORTHO05D003312 2.0e-155 552.4 271 100.0
Thhalv10015702m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 6.5e-82 308.1 240 65.4
Thhalv10015307m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.9e-73 280.0 244 60.2
Thhalv10015855m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 5.7e-70 268.5 245 59.6
Sp6g16760 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.5e-62 243.8 246 51.2
AT5G54820 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 2.6e-62 243.0 234 52.1
Thhalv10015804m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 9.8e-62 241.1 226 57.5
AL8G30260 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 2.8e-61 239.6 234 51.7
AL8G30250 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 1.8e-60 236.9 242 50.0
AT3G29830 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 5.4e-60 235.3 266 51.1
AL1G66030 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 1.2e-59 234.2 246 50.0
Carub.0005s0836 Capsella rubella HOM05D003087 ORTHO05D003312 5.0e-58 228.8 245 51.8
Carub.0004s0399 Capsella rubella HOM05D003087 ORTHO05D003312 1.5e-57 227.3 235 48.5
AT1G56400 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 4.2e-57 225.7 246 48.4
CARHR265840 Cardamine hirsuta HOM05D003087 ORTHO05D003312 3.0e-55 219.5 240 50.8
Sp6g16780 Schrenkiella parvula HOM05D003087 ORTHO05D003312 4.0e-55 219.2 239 51.5
Carub.0008s1509 Capsella rubella HOM05D003087 ORTHO05D003312 8.9e-55 218.0 242 47.9
Thhalv10015433m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 8.9e-55 218.0 237 49.8
Carub.0004s0398 Capsella rubella HOM05D003087 ORTHO05D003312 1.5e-54 217.2 230 47.0
C03p16770 Brassica napus HOM05D003087 ORTHO05D003312 4.4e-54 215.7 244 46.3
BcaC01g06328 Brassica carinata HOM05D003087 ORTHO05D003312 9.8e-54 214.5 244 45.9
Sp6g13710 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.7e-53 213.8 237 50.2
BolC3t14097H Brassica oleracea HOM05D003087 ORTHO05D003312 2.2e-53 213.4 244 45.9
Thhalv10015513m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.4e-52 210.7 237 49.8
Sp6g13720 Schrenkiella parvula HOM05D003087 ORTHO05D003312 5.4e-52 208.8 239 46.0
BolC6t38982H Brassica oleracea HOM05D003087 ORTHO05D003312 1.6e-51 207.2 245 46.9
A02p13580 Brassica napus HOM05D003087 ORTHO05D003312 2.7e-51 206.5 245 46.5
A03p14390 Brassica napus HOM05D003087 ORTHO05D003312 4.5e-51 205.7 245 45.7
BraA03t10736Z Brassica rapa HOM05D003087 ORTHO05D003312 4.5e-51 205.7 245 45.7
C06p38890 Brassica napus HOM05D003087 ORTHO05D003312 7.8e-51 204.9 245 46.1
A07p32700 Brassica napus HOM05D003087 ORTHO05D003312 1.3e-50 204.1 245 46.5
BraA07t30896Z Brassica rapa HOM05D003087 ORTHO05D003312 1.3e-50 204.1 245 46.5
BraA02t06416Z Brassica rapa HOM05D003087 ORTHO05D003312 1.7e-50 203.8 245 45.7
A06p35460 Brassica napus HOM05D003087 ORTHO05D003312 6.6e-50 201.8 244 45.9
BraA06t26469Z Brassica rapa HOM05D003087 ORTHO05D003312 6.6e-50 201.8 244 45.9
BcaC03g14738 Brassica carinata HOM05D003087 ORTHO05D003312 8.6e-50 201.4 245 44.5
C02p21890 Brassica napus HOM05D003087 ORTHO05D003312 8.6e-50 201.4 245 44.5
BolC2t08321H Brassica oleracea HOM05D003087 ORTHO05D003312 8.6e-50 201.4 245 44.5
BcaC07g40126 Brassica carinata HOM05D003087 ORTHO05D003312 3.3e-49 199.5 245 46.5
BcaB01g04327 Brassica carinata HOM05D003087 ORTHO05D003312 5.6e-49 198.7 246 46.3
BcaB01g04331 Brassica carinata HOM05D003087 ORTHO05D003312 4.7e-48 195.7 243 44.0
CARHR117950 Cardamine hirsuta HOM05D003087 ORTHO05D003312 9.2e-44 181.4 221 43.9
AL5G20200 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 2.3e-42 176.8 262 42.4
Thhalv10005956m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 3.3e-41 172.9 230 42.6
Thhalv10003202m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.6e-40 170.6 222 43.2
CARHR054070 Cardamine hirsuta HOM05D003087 ORTHO05D003312 3.1e-39 166.4 240 39.2
Sp5g01160 Schrenkiella parvula HOM05D003087 ORTHO05D003312 2.0e-38 163.7 237 41.4
Carub.0004s0417 Capsella rubella HOM05D003087 ORTHO05D003312 7.5e-38 161.8 230 44.3
C04p30780 Brassica napus HOM05D003087 ORTHO05D003312 9.8e-38 161.4 218 40.8
BolC4t24597H Brassica oleracea HOM05D003087 ORTHO05D003312 9.8e-38 161.4 218 40.8
BcaB02g08119 Brassica carinata HOM05D003087 ORTHO05D003312 3.7e-37 159.5 213 41.8
BcaC02g10284 Brassica carinata HOM05D003087 ORTHO05D003312 6.4e-37 158.7 218 40.4
AL5G44970 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 1.9e-36 157.1 227 42.3
Aa31LG3G10740 Aethionema arabicum HOM05D003087 ORTHO05D003312 3.2e-36 156.4 241 38.6
AL3G50190 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 7.0e-36 155.2 270 37.0
AT3G62230 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 7.0e-36 155.2 217 40.6
Thhalv10027438m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 6.0e-35 152.1 267 36.7
AT2G17305 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 3.0e-34 149.8 270 37.0
Carub.0003s2703 Capsella rubella HOM05D003087 ORTHO05D003312 1.5e-33 147.5 186 41.9
A04p00690 Brassica napus HOM05D003087 ORTHO05D003312 5.6e-33 145.6 215 37.7
BraA04t15788Z Brassica rapa HOM05D003087 ORTHO05D003312 5.6e-33 145.6 215 37.7
Sp4g03660 Schrenkiella parvula HOM05D003087 ORTHO05D003312 7.3e-33 145.2 273 34.8
Cpa.g.sc97.41 Carica papaya HOM05D003087 ORTHO05D003312 2.1e-32 143.7 232 36.2
Carub.0003s3127 Capsella rubella HOM05D003087 ORTHO05D003312 2.3e-31 140.2 248 35.9
Sp7g31920 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.2e-30 137.9 188 42.6
Carub.0005s2895 Capsella rubella HOM05D003087 ORTHO05D003312 3.4e-30 136.3 231 37.7
Sp6g16770 Schrenkiella parvula HOM05D003087 ORTHO05D003312 5.8e-30 135.6 238 34.9
BcaB03g16176 Brassica carinata HOM05D003087 ORTHO05D003312 1.3e-29 134.4 212 40.1
BcaB03g16179 Brassica carinata HOM05D003087 ORTHO05D003312 8.3e-29 131.7 213 39.4
BcaNung03799 Brassica carinata HOM05D003087 ORTHO05D003312 1.4e-28 131.0 279 33.3
BcaNung03364 Brassica carinata HOM05D003087 ORTHO05D003312 1.9e-28 130.6 168 40.5
C07p60200 Brassica napus HOM05D003087 ORTHO05D003312 1.9e-28 130.6 168 40.5
BolC7t46461H Brassica oleracea HOM05D003087 ORTHO05D003312 1.9e-28 130.6 168 40.5
C01p04660 Brassica napus HOM05D003087 ORTHO05D003312 2.4e-28 130.2 279 33.3
BolC1t00449H Brassica oleracea HOM05D003087 ORTHO05D003312 2.4e-28 130.2 279 33.3
BraA03t15334Z Brassica rapa HOM05D003087 ORTHO05D003312 4.1e-28 129.4 186 38.7
Atru.chr2.3270 Acer truncatum HOM05D003087 ORTHO05D003312 9.2e-28 128.3 199 40.7
C02p21910 Brassica napus HOM05D003087 ORTHO05D003312 9.2e-28 128.3 160 42.5
A03p62650 Brassica napus HOM05D003087 ORTHO05D003312 2.1e-27 127.1 168 39.9
BcaB08g35406 Brassica carinata HOM05D003087 ORTHO05D003312 3.5e-27 126.3 194 40.2
THA.LOC104812534 Tarenaya hassleriana HOM05D003087 ORTHO05D003312 4.6e-27 125.9 210 37.1
A01p04270 Brassica napus HOM05D003087 ORTHO05D003312 2.3e-26 123.6 197 38.1
BraA01t00416Z Brassica rapa HOM05D003087 ORTHO05D003312 2.3e-26 123.6 197 38.1
BcaB01g04330 Brassica carinata HOM05D003087 ORTHO05D003312 3.9e-26 122.9 144 49.3
BolC2t08323H Brassica oleracea HOM05D003087 ORTHO05D003312 1.9e-25 120.6 146 42.5
TWI38G0929 Tripterygium wilfordii HOM05D003087 ORTHO05D003312 2.1e-24 117.1 209 35.9
CANSAT78G0127 Cannabis sativa HOM05D003087 ORTHO05D003312 3.1e-23 113.2 180 40.6
QL08p011993 Quercus lobata HOM05D003087 ORTHO05D003312 3.1e-23 113.2 212 36.3
TPR.G37757 Trifolium pratense HOM05D003087 ORTHO05D003312 3.1e-23 113.2 213 33.8
QL08p012174 Quercus lobata HOM05D003087 ORTHO05D003312 8.9e-23 111.7 212 35.4
Actinidia05111 Actinidia chinensis HOM05D003087 ORTHO05D003312 1.2e-22 111.3 262 32.1
Duzib268G1323 Durio zibethinus HOM05D003087 ORTHO05D003312 1.3e-21 107.8 238 32.8
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 3.8e-21 106.3 213 36.2
Sabra11G0122300 Salix brachista HOM05D003087 ORTHO05D003312 4.9e-21 105.9 202 33.7
Sabra16G0285500 Salix brachista HOM05D003087 ORTHO05D003312 4.9e-21 105.9 213 34.3
Carub.0004s2753 Capsella rubella HOM05D003087 ORTHO05D003312 6.4e-21 105.5 159 37.7
Atru.chr2.3272 Acer truncatum HOM05D003087 ORTHO05D003312 8.4e-21 105.1 199 35.2
Manes.03G091400 Manihot esculenta HOM05D003087 ORTHO05D003312 8.4e-21 105.1 209 33.0
Sp4g05500 Schrenkiella parvula HOM05D003087 ORTHO05D003312 8.4e-21 105.1 149 38.9
Eucgr.L03287 Eucalyptus grandis HOM05D003087 ORTHO05D003312 1.1e-20 104.8 223 33.6
Manes.03G091200 Manihot esculenta HOM05D003087 ORTHO05D003312 1.1e-20 104.8 217 33.6
Oeu020132.1 Olea europaea HOM05D003087 ORTHO05D003312 1.1e-20 104.8 183 37.2
Manes.15G074400 Manihot esculenta HOM05D003087 ORTHO05D003312 1.9e-20 104.0 217 30.9
Thhalv10003319m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 4.2e-20 102.8 200 34.0
Rhsim06G0214600 Rhododendron simsii HOM05D003087 ORTHO05D003312 7.1e-20 102.1 184 35.3
Potri.001G420500 Populus trichocarpa HOM05D003087 ORTHO05D003312 3.5e-19 99.8 213 33.8
Eucgr.F00967 Eucalyptus grandis HOM05D003087 ORTHO05D003312 4.6e-19 99.4 204 35.3
CiPaw.11G186600 Carya illinoinensis HOM05D003087 ORTHO05D003312 7.8e-19 98.6 184 33.7
Lj6g0025252 Lotus japonicus HOM05D003087 ORTHO05D003312 2.3e-18 97.1 206 33.5
Manes.03G127400 Manihot esculenta HOM05D003087 ORTHO05D003312 2.3e-18 97.1 208 31.7
Medtr1g090907 Medicago truncatula HOM05D003087 ORTHO05D003312 5.1e-18 95.9 166 34.9
Potri.011G136200 Populus trichocarpa HOM05D003087 ORTHO05D003312 5.1e-18 95.9 206 31.1
Medtr2g048140 Medicago truncatula HOM05D003087 ORTHO05D003312 6.6e-18 95.5 222 31.5
Hma1.2p1_1271F.1_g271870 Hydrangea macrophylla HOM05D003087 ORTHO05D003312 1.5e-17 94.4 187 35.8
Lj1C869T9 Lonicera japonica HOM05D003087 ORTHO05D003312 1.5e-17 94.4 213 32.4
QL08p012142 Quercus lobata HOM05D003087 ORTHO05D003312 1.5e-17 94.4 182 33.0
Glyma.02G289100 Glycine max HOM05D003087 ORTHO05D003312 1.6e-16 90.9 182 32.4
Prupe.4G208200 Prunus persica HOM05D003087 ORTHO05D003312 2.8e-16 90.1 210 29.0
Lalb_Chr02g0152671 Lupinus albus HOM05D003087 ORTHO05D003312 6.2e-16 89.0 187 32.6
Psat6g174320 Pisum sativum HOM05D003087 ORTHO05D003312 6.2e-16 89.0 223 30.9
Lj5g0022613 Lotus japonicus HOM05D003087 ORTHO05D003312 8.1e-16 88.6 214 30.4
Migut.M01788 Erythranthe guttata HOM05D003087 ORTHO05D003312 1.4e-15 87.8 183 32.8
Cfa020391 Carpinus fangiana HOM05D003087 ORTHO05D003312 2.4e-15 87.0 217 32.7
MD03G1208600 Malus domestica HOM05D003087 ORTHO05D003312 2.4e-15 87.0 223 32.7
Psat6g174360 Pisum sativum HOM05D003087 ORTHO05D003312 2.4e-15 87.0 167 34.7
MD11G1223200 Malus domestica HOM05D003087 ORTHO05D003312 3.1e-15 86.7 228 31.6
Cfa020390 Carpinus fangiana HOM05D003087 ORTHO05D003312 5.3e-15 85.9 223 32.7
Lj5g0027658 Lotus japonicus HOM05D003087 ORTHO05D003312 9.0e-15 85.1 214 28.5
Psat5g183360 Pisum sativum HOM05D003087 ORTHO05D003312 1.2e-14 84.7 221 29.4
BcaB01g04328 Brassica carinata HOM05D003087 ORTHO05D003312 2.0e-14 84.0 97 44.3
BcaB01g04329 Brassica carinata HOM05D003087 ORTHO05D003312 2.0e-14 84.0 97 44.3
Medtr3g448340 Medicago truncatula HOM05D003087 ORTHO05D003312 3.4e-14 83.2 225 32.0
Cpa.g.sc97.42 Carica papaya HOM05D003087 ORTHO05D003312 5.8e-14 82.4 224 29.5
TPR.G23589 Trifolium pratense HOM05D003087 ORTHO05D003312 5.8e-14 82.4 136 34.6
MELO3C003962.2 Cucumis melo HOM05D003087 ORTHO05D003312 9.9e-14 81.6 189 30.2
Prupe.4G208300 Prunus persica HOM05D003087 ORTHO05D003312 9.9e-14 81.6 196 29.6
Lalb_Chr04g0248611 Lupinus albus HOM05D003087 ORTHO05D003312 2.2e-13 80.5 203 28.6
MD11G1222800 Malus domestica HOM05D003087 ORTHO05D003312 4.9e-13 79.3 209 28.2
RcHm_v2.0_Chr1g0363631 Rosa chinensis HOM05D003087 ORTHO05D003312 6.4e-13 79.0 228 31.1
Glyma.14G025750 Glycine max HOM05D003087 ORTHO05D003312 2.4e-12 77.0 187 30.5
Prupe.4G208100 Prunus persica HOM05D003087 ORTHO05D003312 5.4e-12 75.9 187 29.9
Glyma.10G200400 Glycine max HOM05D003087 ORTHO05D003312 2.7e-11 73.6 185 27.6
LjContig00272g0016451 Lotus japonicus HOM05D003087 ORTHO05D003312 2.7e-11 73.6 192 29.7
Ciclev10010779m.g Citrus clementina HOM05D003087 ORTHO05D003312 1.3e-10 71.2 110 36.4
Phvul.008G265200 Phaseolus vulgaris HOM05D003087 ORTHO05D003312 2.3e-10 70.5 182 29.1
Cpa.g.sc97.39 Carica papaya HOM05D003087 ORTHO05D003312 3.0e-10 70.1 120 35.0
BcaC03g14740 Brassica carinata HOM05D003087 ORTHO05D003312 1.5e-09 67.8 86 39.5
LjContig00272g0019978 Lotus japonicus HOM05D003087 ORTHO05D003312 1.5e-09 67.8 194 27.8
TAR624G0456 Trochodendron aralioides HOM05D003087 ORTHO05D003312 2.8e-08 63.5 189 28.6
Duzib170G0141 Durio zibethinus HOM05D003087 ORTHO05D003312 4.8e-08 62.8 250 27.2
Medtr7g029260 Medicago truncatula HOM05D003087 ORTHO05D003312 4.8e-08 62.8 97 34.0
CDE05G0823 Ceratophyllum demersum HOM05D003087 ORTHO05D003312 6.2e-08 62.4 184 25.5
Glyma.08G312700 Glycine max HOM05D003087 ORTHO05D003312 6.2e-08 62.4 124 37.1
Atru.chr2.3271 Acer truncatum HOM05D003087 ORTHO05D003312 8.1e-08 62.0 142 33.1
Haze_09620 Corylus avellana HOM05D003087 ORTHO05D003312 8.1e-08 62.0 214 28.5
Cpa.g.sc97.40 Carica papaya HOM05D003087 ORTHO05D003312 3.1e-07 60.1 75 41.3
Dinv40489 Davidia involucrata HOM05D001396 ORTHO05D000493 4.0e-07 59.7 188 30.3
CSS0040473 Camellia sinensis var. sinensis HOM05D003087 ORTHO05D003312 5.3e-07 59.3 97 36.1
LjContig00272g0017385 Lotus japonicus HOM05D003087 ORTHO05D003312 9.0e-07 58.5 145 30.3
LjContig00272g0021764 Lotus japonicus HOM05D003087 ORTHO05D003312 9.0e-07 58.5 145 30.3
TAR629G3015 Trochodendron aralioides HOM05D003087 ORTHO05D003312 1.2e-06 58.2 210 26.7
LjContig00272g0000872 Lotus japonicus HOM05D003087 ORTHO05D003312 1.5e-06 57.8 128 32.0
LjContig00272g0016156 Lotus japonicus HOM05D003087 ORTHO05D003312 2.0e-06 57.4 170 27.6
Glyma.09G102300 Glycine max HOM05D003087 ORTHO05D003312 2.6e-06 57.0 123 35.0
HPP92_016317 Vanilla planifolia HOM05D000051 ORTHO05D000493 4.5e-06 56.2 168 29.8
Medtr5g066890 Medicago truncatula HOM05D003087 ORTHO05D003312 5.8e-06 55.8 88 33.0
QL03p053101 Quercus lobata HOM05D001396 ORTHO05D000493 9.9e-06 55.1 176 27.3
QL05p081980 Quercus lobata HOM05D001396 ORTHO05D000493 9.9e-06 55.1 176 27.3
HPP92_016299 Vanilla planifolia HOM05D005918 ORTHO05D008619 9.9e-06 55.1 162 29.6


User provided reference genes

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